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36 matching publication(s)

Publication	Journal	Year	Score	Verdict
Integrated multi-omics analysis combined with clinical validation reveals that HLA-DRB5 and ODAPH are causal risk genes for keratoconus. PMID 41803193	Sci Rep	2026	64	L1 64/100
Enhanced microRNA accumulation and gene silencing efficiency through optimized precursor base pairing. PMID 41505763	Plant J	2026	87	L1 87/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments. PMID 41055236	RNA Biol	2025	100	L1 100/100
scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification. PMID 40501071	Brief Bioinform	2025	62	L1 62/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
A comparative analysis of blastoid models through single-cell transcriptomics. PMID 39524369	iScience	2024	60	L1 60/100
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy. PMID 38352867	Front Immunol	2024	73	L1 73/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data. PMID 37994351	F1000Res	2023	67	L1 67/100
A global database for modeling tumor-immune cell communication. PMID 37438390	Sci Data	2023	66	L1 66/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque PMID 36681937	Brief Bioinform	2023	94	L1 94/100
Artificial intelligence-guided discovery of gastric cancer continuum. PMID 36692601	Gastric Cancer	2023	71	L1 71/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers. PMID 36440209	Front Endocrinol (Lausanne)	2022	50	L1 50/100
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data. ⚑ PMID 36321549	Mol Syst Biol	2022	53	L1 53/100 ⚑
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. PMID 35494238	iScience	2022	60	L1 60/100
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. PMID 35047825	NAR Cancer	2022	100	L1 100/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data. PMID 34927097	STAR Protoc	2021	50	L1 50/100
Estimation of peptide elongation times from ribosome profiling spectra. PMID 33885812	Nucleic Acids Res	2021	76	L1 76/100
Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. PMID 33746712	Front Mol Neurosci	2021	50	L1 50/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Structure of the intergenic spacers in chicken ribosomal DNA. PMID 31655542	Genet Sel Evol	2019	80	L1 80/100
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID 31164912	Plant Methods	2019	59	L1 59/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID 31114926	Nucleic Acids Res	2019	—	not yet assessed
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. PMID 30744683	Genome Biol	2019	97	L1 97/100
miRge 2.0 for comprehensive analysis of microRNA sequencing data. PMID 30153801	BMC Bioinformatics	2018	89	L1 89/100
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye. PMID 30010758	Gigascience	2018	91	L1 91/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform. ⚑ PMID 29451882	PLoS One	2018	45	L1 45/100 ⚑
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data. PMID 25805170	Nucleic Acids Res	2015	81	L1 81/100