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93 matching publication(s)

Publication	Journal	Year	Score	Verdict
Identification and validation of a metabolic-related gene risk model predicting the prognosis of lung, colon, and breast cancers. PMID 39779736	Sci Rep	2025	74	L1 74/100
CD14loCD301b+ macrophages gathering as a proangiogenic marker in adipose tissues. PMID 39645040	J Lipid Res	2024	59	L1 59/100
Comprehensive analysis of transcriptomics and radiomics revealed the potential of TEDC2 as a diagnostic marker for lung adenocarcinoma. PMID 39553728	PeerJ	2024	80	L1 80/100
Charting and probing the activity of ADARs in human development and cell-fate specification. PMID 39537590	Nat Commun	2024	100	L1 100/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation. PMID 39549198	Geroscience	2024	54	L1 54/100
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction. PMID 39423127	STAR Protoc	2024	78	L1 78/100
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. ⚑ PMID 39418301	PLoS Comput Biol	2024	23	L1 23/100 ⚑
Mapping the Development of Human Spermatogenesis Using Transcriptomics-Based Data: A Scoping Review. PMID 39000031	Int J Mol Sci	2024	—	L1 No computation
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. PMID 38940130	Bioinformatics	2024	87	L1 87/100
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data. PMID 38950178	Bioinformatics	2024	40	L1 40/100
Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs. PMID 38594607	Genet Sel Evol	2024	100	L1 100/100
Identification of the shared hub gene signatures and molecular mechanisms between HIV-1 and pulmonary arterial hypertension. PMID 38528047	Sci Rep	2024	71	L1 71/100
Comprehensive analysis of m6A methylome alterations after azacytidine plus venetoclax treatment for acute myeloid leukemia by nanopore sequencing. PMID 38510975	Comput Struct Biotechnol J	2024	—	L1 No data access
Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions. ⚑ PMID 38443825	BMC Bioinformatics	2024	62	L1 62/100 ⚑
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy. PMID 38352867	Front Immunol	2024	73	L1 73/100
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method. PMID 38247911	Bioengineering (Basel)	2023	75	L1 75/100
Exploring microproteins from various model organisms using the mip-mining database. PMID 37919660	BMC Genomics	2023	85	L1 85/100
HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD). PMID 37907883	BMC Med Genomics	2023	67	L1 67/100
Identification of a novel lncRNA prognostic signature and analysis of functional lncRNA AC115619.1 in hepatocellular carcinoma. PMID 37614318	Front Pharmacol	2023	87	L1 87/100
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes. PMID 37602419	Nucleic Acids Res	2023	77	L1 77/100
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles. PMID 37444556	Cancers (Basel)	2023	90	L1 90/100
A global database for modeling tumor-immune cell communication. PMID 37438390	Sci Data	2023	66	L1 66/100
Detecting aberrant DNA methylation in Illumina DNA methylation arrays: a toolbox and recommendations for its use. PMID 37218167	Epigenetics	2023	73	L2 73/100
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data. PMID 37180100	Front Immunol	2023	64	L1 64/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network. PMID 36855106	BMC Med Genomics	2023	86	L2 86/100
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis. ⚑ PMID 36725967	Sci Rep	2023	74	L1 74/100 ⚑
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque PMID 36681937	Brief Bioinform	2023	94	L1 94/100
Artificial intelligence-guided discovery of gastric cancer continuum. PMID 36692601	Gastric Cancer	2023	71	L1 71/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data. PMID 34927097	STAR Protoc	2021	50	L1 50/100
FEM: mining biological meaning from cell level in single-cell RNA sequencing data. PMID 34909283	PeerJ	2021	75	L1 75/100
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA PMID 34547062	Vavilovskii Zhurnal Genet Selektsii	2021	62	L1 62/100
Weighted gene co-expression network analysis reveals that CXCL10, IRF7, MX1, RSAD2, and STAT1 are related to the chronic stage of spinal cord injury. ⚑ PMID 34532385	Ann Transl Med	2021	44	44/100 ⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu PMID 34056582	Front Artif Intell	2021	92	L1 92/100
Estimation of peptide elongation times from ribosome profiling spectra. PMID 33885812	Nucleic Acids Res	2021	76	L1 76/100
Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. PMID 33746712	Front Mol Neurosci	2021	50	L1 50/100
An OMICs-based meta-analysis to support infection state stratification. PMID 33560295	Bioinformatics	2021	44	L1 44/100
Qualitative Transcriptional Signature for the Pathological Diagnosis of Pancreatic Cancer. PMID 33173782	Front Mol Biosci	2020	71	L1 71/100
Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel. PMID 31913291	Sci Data	2020	89	L1 89/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100
A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a. PMID 28642491	Sci Rep	2017	76	L1 76/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100