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20 matching publication(s)

Publication	Journal	Year	Score	Verdict
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells. PMID 24926665	PLoS One	2014	87	L1 87/100
Transcriptome analysis reveals differential splicing events in IPF lung tissue. PMID 24647608	PLoS One	2014	81	L1 81/100
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio PMID 24236165	PLoS One	2013	82	L1 82/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis. PMID 24376861	PLoS One	2013	85	L1 85/100
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP). PMID 22719821	PLoS One	2012	78	L1 78/100
What defines a photosynthetic microbial mat in western Antarctica? PMID 40043057	PLoS One	2025	85	L1 85/100
SEMdag: Fast learning of Directed Acyclic Graphs via node or layer ordering. PMID 39775401	PLoS One	2025	81	L1 81/100
Stemness genes and miR-1247-3p expression associate with clinicopathological parameters and prognosis in lung adenocarcinoma. PMID 37948380	PLoS One	2023	90	L1 90/100
Identification of immune-related signatures and pathogenesis differences between thoracic aortic aneurysm patients with bicuspid versus tricuspid valves via wei PMID 37883426	PLoS One	2023	97	L1 97/100
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection. PMID 37027361	PLoS One	2023	86	L1 86/100
Analyzing biomarker discovery: Estimating the reproducibility of biomarker sets. PMID 35901020	PLoS One	2022	83	L1 83/100
Pathway-targeting gene matrix for Drosophila gene set enrichment analysis. PMID 34710184	PLoS One	2021	95	L1 95/100
miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles. PMID 34637468	PLoS One	2021	100	L1 100/100
Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods. PMID 34143800	PLoS One	2021	75	L1 75/100
Predicting position along a looping immune response trajectory. PMID 30296270	PLoS One	2018	98	L1 98/100
Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats. PMID 29590198	PLoS One	2018	99	L1 99/100
Invasive bacterial disease trends and characterization of group B streptococcal isolates among young infants in southern Mozambique, 2001-2015. PMID 29351318	PLoS One	2018	97	L1 97/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100