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100 matching publication(s)
Identification of phenotype-specific networks from paired gene expression-cell shape imaging data.
PMID 35197309 · Genome Res · 2022
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Integrated Analysis of Multiple Microarrays Based on Raw Data Identified Novel Gene Signatures in Recurrent Implantation Failure.
PMID 35197930 · Front Endocrinol (Lausanne) · 2022
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer.
PMID 35047825 · NAR Cancer · 2022
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FEM: mining biological meaning from cell level in single-cell RNA sequencing data.
PMID 34909283 · PeerJ · 2021
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Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning.
PMID 34575658 · J Pers Med · 2021
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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
PMID 34561431 · Nat Commun · 2021
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Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods.
PMID 34143800 · PLoS One · 2021
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PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
PMID 34019643 · Nucleic Acids Res · 2021
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Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.
PMID 33729159 · Elife · 2021
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TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
PMID 33705981 · Genomics Proteomics Bioinformatics · 2021
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A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.⚑
PMID 32718933 · G3 (Bethesda) · 2020
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Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality.
PMID 32681306 · Curr Genet · 2020
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Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data.
PMID 32528441 · Front Microbiol · 2020
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Integrated omics in Drosophila uncover a circadian kinome.
PMID 32483184 · Nat Commun · 2020
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An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations.
PMID 32425511 · Bioinform Biol Insights · 2020
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The liver as an immunological barrier redefined by single-cell analysis.
PMID 32176810 · Immunology · 2020
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A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles.
PMID 32111252 · Genome Med · 2020
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Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel.
PMID 31913291 · Sci Data · 2020
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Computational modeling demonstrates that glioblastoma cells can survive spatial environmental challenges through exploratory adaptation.
PMID 31836713 · Nat Commun · 2019
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mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
PMID 31799603 · Nucleic Acids Res · 2020
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Structure of the intergenic spacers in chicken ribosomal DNA.
PMID 31655542 · Genet Sel Evol · 2019
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Contribution of retrotransposition to developmental disorders.
PMID 31604926 · Nat Commun · 2019
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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.
PMID 31492853 · Nat Commun · 2019
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Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0.
PMID 31343654 · Invest Ophthalmol Vis Sci · 2019
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pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
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PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
PMID 30951143 · Database (Oxford) · 2019
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CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing.
PMID 30744683 · Genome Biol · 2019
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Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus.
PMID 30303955 · PLoS Negl Trop Dis · 2018
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miRge 2.0 for comprehensive analysis of microRNA sequencing data.
PMID 30153801 · BMC Bioinformatics · 2018
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Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells.
PMID 29921844 · Nat Commun · 2018
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Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.
PMID 30010758 · Gigascience · 2018
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91/100
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.
PMID 29901703 · Gigascience · 2018
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.
PMID 29783948 · BMC Genomics · 2018
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Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.
PMID 29123534 · Front Plant Sci · 2017
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Genome-wide prediction of DNase I hypersensitivity using gene expression.
PMID 29051481 · Nat Commun · 2017
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A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a.
PMID 28642491 · Sci Rep · 2017
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Cell fixation and preservation for droplet-based single-cell transcriptomics.
PMID 28526029 · BMC Biol · 2017
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Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
PMID 28398514 · Nucleic Acids Res · 2017
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DFAST and DAGA: web-based integrated genome annotation tools and resources.
PMID 27867804 · Biosci Microbiota Food Health · 2016
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AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.
PMID 27082953 · PLoS Comput Biol · 2016
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Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case.
PMID 26286638 · Sci Rep · 2015
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Conservation and losses of non-coding RNAs in avian genomes.
PMID 25822729 · PLoS One · 2015
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Ribosome A and P sites revealed by length analysis of ribosome profiling data.
PMID 25805170 · Nucleic Acids Res · 2015
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