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88 matching publication(s)

Publication	Journal	Year	Score	Verdict
Elucidating the Prognostic and Therapeutic Implications of Insulin Resistance Genes in Breast Cancer: A Machine Learning-Powered Analysis. PMID 40427728	Biology (Basel)	2025	84	L1 84/100
Genomic profiling of Streptococcus agalactiae (Group B Streptococcus) isolates from pregnant women in northeastern Mexico: PMID 40416609	PeerJ	2025	84	L2 84/100
Sequential structure probing of cotranscriptional RNA folding intermediates. PMID 40450030	Nat Commun	2025	77	L1 77/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae. PMID 40364978	Bio Protoc	2025	100	L1 100/100
Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis). PMID 40361012	BMC Genomics	2025	80	L1 80/100
Tracing human genetic histories and natural selection with precise local ancestry inference. PMID 40379651	Nat Commun	2025	76	L1 76/100
A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis. PMID 40323688	J Hered	2025	99	L1 99/100
Covalent binding of thioredoxin to TXNIP is required for diet-induced insulin resistance in the liver. PMID 40345590	J Biol Chem	2025	87	L1 87/100
Integrated bioinformatics analysis screened the key genes and pathways of idiopathic pulmonary fibrosis. PMID 40280949	Sci Rep	2025	93	L1 93/100
The Drosophila estrogen-related receptor promotes triglyceride storage within the larval fat body. PMID 40288680	J Lipid Res	2025	88	L1 88/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
Dynamic interaction of MYC enhancer RNA with YEATS2 protein regulates MYC gene transcription in pancreatic cancer. PMID 40216980	EMBO Rep	2025	90	90/100
GRAMD1B is a regulator of lipid homeostasis, autophagic flux and phosphorylated tau. PMID 40204713	Nat Commun	2025	91	L1 91/100
Comprehensive benchmarking of large language models for RNA secondary structure prediction. PMID 40205851	Brief Bioinform	2025	88	L1 88/100
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets. ⚑ PMID 40208796	Gigascience	2025	76	L1 76/100 ⚑
High performance imputation of structural and single nucleotide variants using low-coverage whole genome sequencing. PMID 40155798	Genet Sel Evol	2025	85	85/100
SIRE 2.0: a novel method for estimating polygenic host effects underlying infectious disease transmission, and analytical expressions for prediction accuracies. PMID 40169992	Genet Sel Evol	2025	83	L1 83/100
Hypoxia-associated genes as predictors of outcomes in gastric cancer: a genomic approach. PMID 40129974	Front Immunol	2025	96	L1 96/100
Streaming Long-Read Sequence Alignments for HLA Predictions Using HLAminer. PMID 40145684	Curr Protoc	2025	90	L1 90/100
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering. PMID 40131310	Brief Bioinform	2025	85	L1 85/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
TGF-β-mediated activation of fibroblasts in cervical cancer: implications for tumor microenvironment and prognosis. PMID 40124621	PeerJ	2025	79	L1 79/100
What defines a photosynthetic microbial mat in western Antarctica? PMID 40043057	PLoS One	2025	85	L1 85/100
Deubiquitination enzyme USP35 negatively regulates MAVS signaling to inhibit anti-tumor immunity. PMID 40016186	Cell Death Dis	2025	81	L1 81/100
7SL RNA and signal recognition particle orchestrate a global cellular response to acute thermal stress. PMID 39952919	Nat Commun	2025	93	L1 93/100
Optimal Dual RNA-Seq Mapping for Accurate Pathogen Detection in Complex Eukaryotic Hosts. PMID 39959292	Bio Protoc	2025	90	L1 90/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Direct observations of cross-scale wave-particle energy transfer in space plasmas. PMID 39919183	Sci Adv	2025	94	94/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Single-Cell Hi-C Technologies and Computational Data Analysis. PMID 39887949	Adv Sci (Weinh)	2025	80	L1 80/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis. PMID 39890881	Sci Rep	2025	75	L1 75/100
Monocytes serve as Shiga toxin carriers during the development of hemolytic uremic syndrome. PMID 39871175	Cell Mol Biol Lett	2025	84	L1 84/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma. PMID 39856156	Sci Rep	2025	83	L1 83/100
Correcting scale distortion in RNA sequencing data. PMID 39875825	BMC Bioinformatics	2025	76	L1 76/100
Exploration of the shared diagnostic genes and molecular mechanism between obesity and atherosclerosis via bioinformatic analysis. PMID 39825072	Sci Rep	2025	76	L1 76/100
SEMdag: Fast learning of Directed Acyclic Graphs via node or layer ordering. PMID 39775401	PLoS One	2025	81	L1 81/100
Enhancing chemotherapy response prediction via matched colorectal tumor-organoid gene expression analysis and network-based biomarker selection. PMID 39754813	Transl Oncol	2025	78	L1 78/100
A single-cell compendium of human cerebrospinal fluid identifies disease-associated immune cell populations. PMID 39744938	J Clin Invest	2025	78	L1 78/100