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38 matching publication(s)

Publication	Journal	Year	Score	Verdict
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes. PMID 40379625	Nat Commun	2025	84	L1 84/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
Single-cell analysis of testicular bacterial microbiome changes during aging and effect on reproductive capacity in mice. PMID 41438041	iScience	2025	78	L1 78/100
Reconstruction of 2,965 Microbial Genomes from Mangrove Sediments across Guangxi, China. PMID 41419779	Sci Data	2025	87	L1 87/100
Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates. PMID 41350938	EMBO J	2025	78	L1 78/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarum. PMID 41212030	mBio	2025	86	L1 86/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data. PMID 41229397	NAR Genom Bioinform	2025	75	L1 75/100
Recombination events restored the functional horned haplotypes in the offspring of polled parents. PMID 41174470	Genet Sel Evol	2025	98	L1 98/100
Comprehensive Genomic and Phenotypic Characterization of Escherichia coli O78:H9 Strain HPVN24 Isolated from Diarrheic Poultry in Vietnam. PMID 41156725	Microorganisms	2025	86	L1 86/100
Hepatocyte dedifferentiation in 2D culture reveals extensive transcriptomic and proteomic rewiring. PMID 41111196	Hepatol Commun	2025	77	L1 77/100
Under the Shadow: Old-biased Genes Are Subject to Weak Purifying Selection at Both the Tissue- and Cell Type-Specific Levels. PMID 41092135	Genome Biol Evol	2025	93	L1 93/100
Age Deceleration and Reversal Gene Patterns in Dauer Diapause. PMID 41104926	Aging Cell	2025	88	L1 88/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments. PMID 41055236	RNA Biol	2025	100	L1 100/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress. PMID 40869111	Int J Mol Sci	2025	75	L1 75/100
Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity. PMID 40846763	Nat Genet	2025	75	L1 75/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
Metabolic reprogramming and prognostic insights in molecular landscapes driven by glycolysis in ovarian cancer. PMID 40707588	Sci Rep	2025	77	L1 77/100
In vivo prime editing rescues alternating hemiplegia of childhood in mice. PMID 40695277	Cell	2025	84	L1 84/100
Transcriptome-Proteome Profiling in Burkholderia thailandensis during the Transition from Exponential to Stationary Phase. PMID 40680064	J Proteome Res	2025	80	L1 80/100
Single-cell RNA-sequencing highlights a curtailed NK cell function in convalescent COVID-19 pregnant women. PMID 40661959	Front Immunol	2025	87	L1 87/100
Improving genomic prediction accuracy for methane emission and feed efficiency in sheep: integrating rumen microbial PCA with host genomic variation using neura PMID 40676527	Genet Sel Evol	2025	85	L1 85/100
An engineered tumor organoid model reveals cellular identity and signaling trajectories underlying SFPQ-TFE3 driven translocation RCC. PMID 40463960	iScience	2025	88	L1 88/100
Elucidating the Prognostic and Therapeutic Implications of Insulin Resistance Genes in Breast Cancer: A Machine Learning-Powered Analysis. PMID 40427728	Biology (Basel)	2025	84	L1 84/100
Genomic profiling of Streptococcus agalactiae (Group B Streptococcus) isolates from pregnant women in northeastern Mexico: PMID 40416609	PeerJ	2025	84	L2 84/100
Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis). PMID 40361012	BMC Genomics	2025	80	L1 80/100
The Drosophila estrogen-related receptor promotes triglyceride storage within the larval fat body. PMID 40288680	J Lipid Res	2025	88	L1 88/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
SIRE 2.0: a novel method for estimating polygenic host effects underlying infectious disease transmission, and analytical expressions for prediction accuracies. PMID 40169992	Genet Sel Evol	2025	83	L1 83/100
Hypoxia-associated genes as predictors of outcomes in gastric cancer: a genomic approach. PMID 40129974	Front Immunol	2025	96	L1 96/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
Deubiquitination enzyme USP35 negatively regulates MAVS signaling to inhibit anti-tumor immunity. PMID 40016186	Cell Death Dis	2025	81	L1 81/100
7SL RNA and signal recognition particle orchestrate a global cellular response to acute thermal stress. PMID 39952919	Nat Commun	2025	93	L1 93/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Exploration of the shared diagnostic genes and molecular mechanism between obesity and atherosclerosis via bioinformatic analysis. PMID 39825072	Sci Rep	2025	76	L1 76/100