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Filters: 2025 ✕ Computational biology ✕ Reproducible only ✕ clear all

17 matching publication(s)

Publication	Journal	Year	Score	Verdict
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes. PMID 40379625	Nat Commun	2025	84	L1 84/100
Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates. PMID 41350938	EMBO J	2025	78	L1 78/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data. PMID 41229397	NAR Genom Bioinform	2025	75	L1 75/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments. PMID 41055236	RNA Biol	2025	100	L1 100/100
Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress. PMID 40869111	Int J Mol Sci	2025	75	L1 75/100
Metabolic reprogramming and prognostic insights in molecular landscapes driven by glycolysis in ovarian cancer. PMID 40707588	Sci Rep	2025	77	L1 77/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae. PMID 40364978	Bio Protoc	2025	100	L1 100/100
Integrated bioinformatics analysis screened the key genes and pathways of idiopathic pulmonary fibrosis. PMID 40280949	Sci Rep	2025	93	L1 93/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis. PMID 39890881	Sci Rep	2025	75	L1 75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma. PMID 39856156	Sci Rep	2025	83	L1 83/100
Exploration of the shared diagnostic genes and molecular mechanism between obesity and atherosclerosis via bioinformatic analysis. PMID 39825072	Sci Rep	2025	76	L1 76/100