Jingyuan Fu
Reproducibility track record
1
assessed papers
90/100
mean reproducibility
1
reproduced (C1–C2)
0
flagged
171
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
Funders
—
Frequent co-authors
Mathieu Platteel 1David Melzer 1Thomas Meitinger 1Tōnu Esko 1Astrid Petersmann 1Bernett Lee 1Fernando Rivadeneira 1Michael Roden 1Johannes Kettunen 1Andrew R. Wood 1
Institutions
University Medical Center Groningen 1University of Groningen 1University of Tartu 1Boston Children's Hospital 1Broad Institute 1Harvard University 1
Geography (author institutions)
NL 1EE 1US 1DE 1FI 1GB 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
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Cell Specific eQTL Analysis without Sorting Cells.
2015 L1 90/100
Complete publication record (310)
Request a reproduction →1 assessed by us (1 reproduced) · 309 not yet assessed — every PubMed paper on record, linked below.
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Multi-cohort proteogenomic analyses reveal genetic effects across the proteome and diseasome ↗Cell · 2026 · PMID 42097137not yet assessed
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The interplay of sleep characteristics with health factors and gut microbiome ↗Nature Communications · 2026 · PMID 41688445not yet assessed
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Assessing Nutraceuticals for Hepatic Steatosis: A Standardized In Vitro Approach ↗Nutrients · 2026 · PMID 41683214not yet assessed
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Maternal influences on infant gut microbiome and health ↗Nature · 2026 · PMID 42587158not yet assessed
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GECSI: large-scale chromatin state imputation from gene expression ↗Genome biology · 2026 · PMID 41256458not yet assessed
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Wilforine attenuates inflammatory osteolysis by suppressing osteoclast fusion through JAK-STAT-stomatin immunoregulatory signaling ↗Frontiers in Immunology · 2026 · PMID 41909682not yet assessed
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EpiATLAS – a reference for human epigenomic research ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42395464not yet assessed
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not yet assessed
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Pregnancy and Early-Life Gut Virome in the Lifelines NEXT cohort: Origin, Persistence, Influencing Factors and Health Implications ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Gene Expression-based Chromatin State Imputation (GECSI) ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Gene Expression-based Chromatin State Imputation (GECSI) ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Comprehensive profiling of infant gut virome assembly reveals associations with eczema and wheeze ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Gene Expression-based Chromatin State Imputation (GECSI) ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Evaluation of the Immortalized Primary Human Hepatocyte Cell Line Fa2N-4 as a Model for Metabolic Dysfunction–Associated Steatotic Liver Disease ↗Gastro Hep Advances · 2026not yet assessed
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Comparison of hiPSC-derived hepatic organoids and liver-on-a-chip systems reveal microenvironment-driven maturation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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HLA-II peptide-binding diversity shapes humoral immune responses and susceptibility to infections ↗Nature Communications · 2026 · PMID 42686785not yet assessed
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VCF files of HepG2 and Fa2N-4 ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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VCF files of HepG2 and Fa2N-4 ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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not yet assessed
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SNV-MWAS catalog ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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SNV-MWAS catalog ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Evaluation of the Immortalized Primary Human Hepatocyte Cell Line Fa2N-4 as a Model for Metabolic Dysfunction-Associated Steatotic Liver Disease. ↗PubMed · 2026 · PMID 42755934not yet assessed
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Compositional microbiome-based signatures associate with general health status: findings from a large population-based cohort study ↗medRxiv · 2026not yet assessed
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Global genetic diversity of human gut microbiome species is related to geographic location and host health ↗Cell · 2025 · PMID 40311618not yet assessed
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Microbiota-derived bile acids antagonize the host androgen receptor and drive anti-tumor immunity ↗Cell · 2025 · PMID 40239649not yet assessed
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Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants ↗Cell Reports · 2025 · PMID 40413742not yet assessed
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Multi-dimensional metagenomics ↗Nature Reviews Bioengineering · 2025not yet assessed
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MicrobeRX: a tool for enzymatic-reaction-based metabolite prediction in the gut microbiome ↗Microbiome · 2025 · PMID 40108657not yet assessed
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New insights in amino sugar metabolism by the gut microbiome ↗Gut Microbes · 2025 · PMID 40415338not yet assessed
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Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer ↗Nature Communications · 2025 · PMID 41274873not yet assessed
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Host and environmental determinants of human milk oligosaccharides and microbiota in the Lifelines NEXT cohort ↗Cell Reports · 2025 · PMID 40783943not yet assessed
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Unveiling horizontal gene transfer in the gut microbiome: bioinformatic strategies and challenges in metagenomics analysis ↗National Science Review · 2025 · PMID 40438350not yet assessed
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Dose-dependent immunotoxic mechanisms of celastrol via modulation of the PI3K-Akt signaling pathway ↗Frontiers in Pharmacology · 2025 · PMID 40495892not yet assessed
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Crohn’s disease and ulcerative colitis exhibit prediagnostic antibody signatures with shared and divergent changes towards disease onset ↗Gut · 2025 · PMID 40602996not yet assessed
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Distinct microbial and metabolic shifts characterize acute coronary syndrome and recovery ↗iMeta · 2025 · PMID 41112052not yet assessed
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DNA methylation of genes involved in lipid metabolism drives adiponectin levels and metabolic disease ↗Diabetologia · 2025 · PMID 41057690not yet assessed
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High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation ↗Gut Microbes · 2025 · PMID 40289251not yet assessed
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iMeta: Boosting academic sharing and collaboration via social media ↗iMeta · 2025 · PMID 41112051not yet assessed
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Influence of Degumming Conditions on the Stable Isotope Composition of Silk ↗Journal of Archaeological Method and Theory · 2025not yet assessed
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Longitudinal Gut Microbiota Tracking Reveals the Persistent Spread of Mobile Genes and HGT-Driven Community Stabilization ↗Research Square · 2025not yet assessed
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Discovery, functionality and global dynamics of Bifidobacterium longum subsp. nexti : a novel starch-degrading subspecies in the infant gut ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Research Progress in the Role of Testosterone in Male Depression. ↗PubMed · 2025 · PMID 40331387not yet assessed
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Genetic effect of the Ph1 locus on transcriptome atlas of anther development‐related genes, meiotic chromosome behavior and agronomic traits in bread wheat ↗The Plant Journal · 2025 · PMID 40353704not yet assessed
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Advanced Dialogues: From Genomes to Microbiomes—A Cross‐Disciplinary Journey ↗Advanced Genetics · 2025 · PMID 40657557not yet assessed
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Microbial Adaptation in Healthy Ageing: Insights from Age-associated Structural Variation in the Human Gut Microbiome ↗Research Square · 2025not yet assessed
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Innovative strategies to enhance MSCs efficacy in acute kidney injury (Review) ↗International Journal of Molecular Medicine · 2025 · PMID 40910259not yet assessed
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Misfortunes never come singly: Microbial metabolites link heart failure and chronic kidney disease ↗Cell Host & Microbe · 2025 · PMID 41067218not yet assessed
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Additional file 2 of MicrobeRX: a tool for enzymatic-reaction-based metabolite prediction in the gut microbiome ↗Figshare · 2025not yet assessed
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Genome-wide characterization of circulating metabolic biomarkers ↗Nature · 2024 · PMID 38448586not yet assessed
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Host genetic regulation of human gut microbial structural variation ↗Nature · 2024 · PMID 38172637not yet assessed
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Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries ↗Cell · 2024 · PMID 38981480not yet assessed
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Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses ↗Scientific Reports · 2024 · PMID 38366085not yet assessed
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Transmission and dynamics of mother-infant gut viruses during pregnancy and early life ↗Nature Communications · 2024 · PMID 38431663not yet assessed
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Networks of gut bacteria relate to cardiovascular disease in a multi-ethnic population: the HELIUS study ↗Cardiovascular Research · 2024 · PMID 38289866not yet assessed
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Unraveling interindividual variation of trimethylamine N‐oxide and its precursors at the population level ↗iMeta · 2024 · PMID 38898991not yet assessed
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Association between gut microbiome profiles and host metabolic health across the life course: a population-based study ↗The Lancet Regional Health - Europe · 2024 · PMID 39834614not yet assessed
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Reproducible gut microbial signatures in bipolar and schizophrenia spectrum disorders: A metagenome-wide study ↗Brain Behavior and Immunity · 2024 · PMID 39032544not yet assessed
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ChatGPT and generative AI are revolutionizing the scientific community: A Janus‐faced conundrum ↗iMeta · 2024 · PMID 38882492not yet assessed
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Multiple indicators of gut dysbiosis predict all-cause and cause-specific mortality in solid organ transplant recipients ↗Gut · 2024 · PMID 38955400not yet assessed
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Genome-wide Studies Reveal Genetic Risk Factors for Hepatic Fat Content ↗Genomics Proteomics & Bioinformatics · 2024 · PMID 39142818not yet assessed
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Linking the gut microbiome to host DNA methylation by a discovery and replication epigenome-wide association study ↗BMC Genomics · 2024 · PMID 39702006not yet assessed
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Epigenome-wide association study on the plasma metabolome suggests self-regulation of the glycine and serine pathway through DNA methylation ↗Clinical Epigenetics · 2024 · PMID 39138531not yet assessed
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Implications of blood type in personalised microbiome therapy ↗Clinical and Translational Medicine · 2024 · PMID 38468485not yet assessed
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Antibody signatures against viruses and microbiome reflect past and chronic exposures and associate with aging and inflammation ↗iScience · 2024 · PMID 38868191not yet assessed
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PICALO: principal interaction component analysis for the identification of discrete technical, cell-type, and environmental factors that mediate eQTLs ↗Genome biology · 2024 · PMID 38254182not yet assessed
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Metabolomics profiling of Type D personality traits ↗Journal of Psychosomatic Research · 2024 · PMID 39577138not yet assessed
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Pregnancy and Early Life Gut Microbiome: Influencing Factors and Health Implications ↗Research Square · 2024not yet assessed
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DOP20 Changes in systemic antibody epitope repertoires from preclinical to established Inflammatory Bowel Disease ↗Journal of Crohn s and Colitis · 2024not yet assessed
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Microbiome-wide PheWAS links gut microbial SNVs to human health and exposures ↗Research Square · 2024not yet assessed
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Antibody signatures against viruses and microbiome reflect past and chronic exposures and associate with aging and inflammation ↗medRxiv · 2024not yet assessed
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High-resolution analysis of the treated coeliac disease microbiome reveals strain-level variation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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117 CHANGES IN SYSTEMIC ANTIBODY EPITOPE REPERTOIRES FROM PRECLINICAL TO ESTABLISHED INFLAMMATORY BOWEL DISEASE ↗Gastroenterology · 2024not yet assessed
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Gut Microbiome Profile is Associated with Host Metabolic Health Across a Life Course ↗SSRN Electronic Journal · 2024not yet assessed
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A Study of Fresh Commodities Sales Analysis Based on Time Series Modeling - Taking Vegetable Category Commodities as an Example ↗Highlights in Business Economics and Management · 2024not yet assessed
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Dynamics and Determinants of the Gut Mobilome in Early Life ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Faecal metabolome and its determinants in inflammatory bowel disease ↗Gut · 2023 · PMID 36958817not yet assessed
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gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota ↗Nature Biotechnology · 2023 · PMID 36782070not yet assessed
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iPSC-derived organ-on-a-chip models for personalized human genetics and pharmacogenomics studies ↗Trends in Genetics · 2023 · PMID 36746737not yet assessed
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Phage-display immunoprecipitation sequencing of the antibody epitope repertoire in inflammatory bowel disease reveals distinct antibody signatures ↗Immunity · 2023 · PMID 37164015not yet assessed
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Gut feelings: the relations between depression, anxiety, psychotropic drugs and the gut microbiome ↗Gut Microbes · 2023 · PMID 38017662not yet assessed
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Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire ↗Immunity · 2023 · PMID 37164013not yet assessed
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Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline ↗Journal of Cachexia Sarcopenia and Muscle · 2023 · PMID 37591518not yet assessed
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The gut microbiome across the cardiovascular risk spectrum ↗European Journal of Preventive Cardiology · 2023 · PMID 38060843not yet assessed
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Impact of occupational pesticide exposure on the human gut microbiome ↗Frontiers in Microbiology · 2023 · PMID 37637104not yet assessed
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Dual UHPLC-HRMS Metabolomics and Lipidomics and Automated Data Processing Workflow for Comprehensive High-Throughput Gut Phenotyping ↗Analytical Chemistry · 2023 · PMID 37220321not yet assessed
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Gut dysbiosis associates with cytokine production capacity in viral-suppressed people living with HIV ↗Frontiers in Cellular and Infection Microbiology · 2023 · PMID 37583444not yet assessed
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Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques ↗ISME Communications · 2023 · PMID 37945978not yet assessed
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Health-related quality of life is linked to the gut microbiome in kidney transplant recipients ↗Nature Communications · 2023 · PMID 38042820not yet assessed
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High-throughput proteomic analysis reveals systemic dysregulation in virally suppressed people living with HIV ↗JCI Insight · 2023 · PMID 37079385not yet assessed
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Human induced pluripotent stem cell–derived liver-on-a-chip for studying drug metabolism: the challenge of the cytochrome P450 family ↗Frontiers in Pharmacology · 2023 · PMID 37448965not yet assessed
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CRISPR dynamics during the interaction between bacteria and phage in the first year of life ↗Microbial Genomics · 2023 · PMID 37402176not yet assessed
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Beyond personal space: Unveiling the transmission pattern of the human gut and oral microbiome ↗iMeta · 2023 · PMID 38868429not yet assessed
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iMeta progress and acknowledgment of reviewers in 2022 ↗iMeta · 2023 · PMID 38868344not yet assessed
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Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques ↗Research Square · 2023not yet assessed
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Health-Related Quality of Life is Linked to the Gut Microbiome in Kidney Transplant Recipients ↗Research Square · 2023not yet assessed
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The gut microbiome across the cardiovascular risk spectrum ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Multiple indicators of gut dysbiosis predict all-cause and cause-specific mortality in solid organ transplant recipients ↗medRxiv · 2023not yet assessed
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A Dual UHPLC-HRMS-Based Fecal Metabolomics and Lipidomics Analysis and Automated Data Processing Pipeline for Comprehen-sive Gut Phenotyping ↗ChemRxiv · 2023not yet assessed
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A Dual UHPLC-HRMS-Based Fecal Metabolomics and Lipidomics Analysis and Automated Data Processing Pipeline for Comprehensive Gut Phenotyping ↗ChemRxiv · 2023not yet assessed
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The Wonderland of Our Genomes ↗University of Groningen Press eBooks · 2023not yet assessed
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Mother-Infant Gut Viruses and their Bacterial Hosts: Transmission Patterns and Dynamics during Pregnancy and Early Life ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Linking the gut microbiome to host DNA methylation by a discovery and replication epigenome-wide association study ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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not yet assessed
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not yet assessed
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UK Biobank GWAS result of Fatty Liver Index ↗Harvard Dataverse · 2023not yet assessed
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not yet assessed
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Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project ↗Nature Genetics · 2022 · PMID 35115690not yet assessed
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Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome ↗Nature Medicine · 2022 · PMID 36216932not yet assessed
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Challenges and future directions for studying effects of host genetics on the gut microbiome ↗Nature Genetics · 2022 · PMID 35115688not yet assessed
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Gut microbial DL-endopeptidase alleviates Crohn’s disease via the NOD2 pathway ↗Cell Host & Microbe · 2022 · PMID 36049483not yet assessed
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Gut microbiome dysbiosis is associated with increased mortality after solid organ transplantation ↗Science Translational Medicine · 2022 · PMID 36044594not yet assessed
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Genetic, parental and lifestyle factors influence telomere length ↗Communications Biology · 2022 · PMID 35681050not yet assessed
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Discovery, diversity, and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts ↗Cell Reports · 2022 · PMID 35021085not yet assessed
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Age-dependent sex differences in cardiometabolic risk factors ↗Nature Cardiovascular Research · 2022 · PMID 39196077not yet assessed
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The Gut Microbiome Composition Is Altered in Long-standing Type 1 Diabetes and Associates With Glycemic Control and Disease-Related Complications ↗Diabetes Care · 2022 · PMID 35766965not yet assessed
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Nanocarriers for combating biofilms: Advantages and challenges ↗Journal of Applied Microbiology · 2022 · PMID 35621701not yet assessed
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The 2000HIV study: Design, multi-omics methods and participant characteristics ↗Frontiers in Immunology · 2022 · PMID 36605197not yet assessed
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Diversity and Ecology of Caudoviricetes Phages with Genome Terminal Repeats in Fecal Metagenomes from Four Dutch Cohorts ↗Viruses · 2022 · PMID 36298860not yet assessed
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Systematic analysis of relationships between plasma branched-chain amino acid concentrations and cardiometabolic parameters: an association and Mendelian randomization study ↗BMC Medicine · 2022 · PMID 36522747not yet assessed
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iMeta: Integrated meta‐omics for biology and environments ↗iMeta · 2022 · PMID 38867730not yet assessed
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Microbial vitamin production mediates dietary effects on diabetic risk ↗Gut Microbes · 2022 · PMID 36474346not yet assessed
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Large HDL particles negatively associate with leukocyte counts independent of cholesterol efflux capacity: A cross sectional study in the population-based LifeLines DEEP cohort ↗Atherosclerosis · 2022 · PMID 35091264not yet assessed
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Microbiome-Related Indole and Serotonin Metabolites are Linked to Inflammation and Psychiatric Symptoms in People Living with HIV ↗International Journal of Tryptophan Research · 2022 · PMID 36187510not yet assessed
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Author Correction: Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project ↗Nature Genetics · 2022 · PMID 35879415not yet assessed
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The faecal metabolome and its determinants in inflammatory bowel disease ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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not yet assessed
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Unbiased identification of unknown cellular and environmental factors that mediate eQTLs using principal interaction component analysis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses ↗Research Square · 2022not yet assessed
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Genome-wide characterization of circulating metabolic biomarkers reveals substantial pleiotropy and novel disease pathways ↗medRxiv · 2022not yet assessed
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HIV-linked gut dysbiosis associates with cytokine production capacity in viral-suppressed people living with HIV ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Diversity and ecology of Caudoviricetes phages with genome terminal repeats in fecal metagenomes from four Dutch cohorts ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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not yet assessed
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not yet assessed
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Publisher Correction: Age-dependent sex differences in cardiometabolic risk factors ↗Nature Cardiovascular Research · 2022 · PMID 40281684not yet assessed
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Introducing Financial Literacy to Residential Colleges’ General Education: A Systematic Review ↗2022not yet assessed
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Pre-computed MGCs from human microbiome reference genomes ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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Pre-computed MGCs from human microbiome reference genomes ↗Socio-Environmental Systems Modeling · 2022not yet assessed
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Large-scale association analyses identify host factors influencing human gut microbiome composition ↗Nature Genetics · 2021 · PMID 33462485not yet assessed
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Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome ↗Gut · 2021 · PMID 33811041not yet assessed
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The long-term genetic stability and individual specificity of the human gut microbiome ↗Cell · 2021 · PMID 33838112not yet assessed
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Association of Insulin Resistance and Type 2 Diabetes With Gut Microbial Diversity ↗JAMA Network Open · 2021 · PMID 34323983not yet assessed
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Gut microbiome and bile acids in obesity-related diseases ↗Best Practice & Research Clinical Endocrinology & Metabolism · 2021 · PMID 33707081not yet assessed
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Strategies for Interfering With Bacterial Early Stage Biofilms ↗Frontiers in Microbiology · 2021 · PMID 34168632not yet assessed
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Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation ↗International Journal of Molecular Sciences · 2021 · PMID 34070915not yet assessed
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Characterization of gut microbial structural variations as determinants of human bile acid metabolism ↗Cell Host & Microbe · 2021 · PMID 34847370not yet assessed
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Population-wide diversity and stability of serum antibody epitope repertoires against human microbiota ↗Nature Medicine · 2021 · PMID 34282338not yet assessed
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Stability of the human gut virome and effect of gluten-free diet ↗Cell Reports · 2021 · PMID 34010651not yet assessed
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Healthy Cotwins Share Gut Microbiome Signatures With Their Inflammatory Bowel Disease Twins and Unrelated Patients ↗Gastroenterology · 2021 · PMID 33476671not yet assessed
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Role of the gut microbiome in mediating lactose intolerance symptoms ↗Gut · 2021 · PMID 34086598not yet assessed
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The Composition and Metabolic Potential of the Human Small Intestinal Microbiota Within the Context of Inflammatory Bowel Disease ↗Journal of Crohn s and Colitis · 2021 · PMID 33515008not yet assessed
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A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read Sequencing ↗Frontiers in Genetics · 2021 · PMID 34040632not yet assessed
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Long Non-Coding RNAs Involved in Progression of Non-Alcoholic Fatty Liver Disease to Steatohepatitis ↗Cells · 2021 · PMID 34440652not yet assessed
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Low production of 12α-hydroxylated bile acids prevents hepatic steatosis in Cyp2c70−/− mice by reducing fat absorption ↗Journal of Lipid Research · 2021 · PMID 34626589not yet assessed
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Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement ↗PLoS ONE · 2021 · PMID 33831035not yet assessed
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Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability ↗Frontiers in Immunology · 2021 · PMID 34512620not yet assessed
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Su510 HEALTHY COTWINS SHARE GUT MICROBIOME SIGNATURES WITH THEIR INFLAMMATORY BOWEL DISEASE TWINS AND UNRELATED PATIENTS ↗Gastroenterology · 2021not yet assessed
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A systematic analysis of metabolic pathways in the human gut microbiota ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Mapping genetic determinants of 184 circulating proteins in 26,494 individuals to connect proteins and diseases ↗medRxiv · 2021not yet assessed
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Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19 ↗medRxiv · 2021 · PMID 33851187not yet assessed
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Discovery, diversity and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Genetic, parental and lifestyle factors influence telomere length ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Gut microbial structural variations as determinants of human bile acid metabolism ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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In-depth characterization of the serum antibody epitope repertoire in inflammatory bowel disease using phage-displayed immunoprecipitation sequencing ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Genetic, environmental and intrinsic determinants of the human antibody epitope repertoire ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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OP29 Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome ↗Journal of Crohn s and Colitis · 2021not yet assessed
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Dominant drivers of the human plasma metabolome ↗Research Square · 2021not yet assessed
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Gut Microbiome Dysbiosis is Associated with Increased Mortality following Solid Organ Transplantation ↗Research Square · 2021not yet assessed
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Gut Microbial Structural Variations as Determinants of Human Bile Acid Metabolism ↗SSRN Electronic Journal · 2021not yet assessed
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P006 Host-genetics, dysbiosis, and clinical history explains fecal metabolic alterations in patients with Inflammatory Bowel Disease ↗Journal of Crohn s and Colitis · 2021not yet assessed
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Transmission of gut bacteria and viruses from mothers to infants ↗Research Square · 2021not yet assessed
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Gut Microbial Structural Variations as Determinants of Human Bile Acid Metabolism ↗SSRN Electronic Journal · 2021not yet assessed
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Interaction between drugs and the gut microbiome ↗Gut · 2020 · PMID 32409589not yet assessed
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Impact of commonly used drugs on the composition and metabolic function of the gut microbiota ↗Nature Communications · 2020 · PMID 31953381not yet assessed
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Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals ↗Nature Metabolism · 2020 · PMID 33067605not yet assessed
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Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity ↗Nature Communications · 2020 · PMID 32782301not yet assessed
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Genetic and Microbial Associations to Plasma and Fecal Bile Acids in Obesity Relate to Plasma Lipids and Liver Fat Content ↗Cell Reports · 2020 · PMID 33027657not yet assessed
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Integration of epidemiologic, pharmacologic, genetic and gut microbiome data in a drug–metabolite atlas ↗Nature Medicine · 2020 · PMID 31932804not yet assessed
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Identification, Heritability, and Relation With Gene Expression of Novel DNA Methylation Loci for Blood Pressure ↗Hypertension · 2020 · PMID 32520614not yet assessed
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Cholangiopathy and Biliary Fibrosis in Cyp2c70-Deficient Mice Are Fully Reversed by Ursodeoxycholic Acid ↗Cellular and Molecular Gastroenterology and Hepatology · 2020 · PMID 33309945not yet assessed
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Lack of Association Between Genetic Variants at ACE2 and TMPRSS2 Genes Involved in SARS-CoV-2 Infection and Human Quantitative Phenotypes ↗Frontiers in Genetics · 2020 · PMID 32582302not yet assessed
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Whole exome sequencing analyses reveal gene–microbiota interactions in the context of IBD ↗Gut · 2020 · PMID 32651235not yet assessed
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Synthesis, Characterization, and Pharmacodynamics Study of Enrofloxacin Mesylate ↗Drug Design Development and Therapy · 2020 · PMID 32158191not yet assessed
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A cross-omics integrative study of metabolic signatures of chronic obstructive pulmonary disease ↗BMC Pulmonary Medicine · 2020 · PMID 32677943not yet assessed
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The role of the gut microbiome in graft fibrosis after pediatric liver transplantation ↗Human Genetics · 2020 · PMID 32920649not yet assessed
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Large-scale association analyses identify host factors influencing human gut microbiome composition ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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The Long-Term Genetic Stability and Individual Specificity of the Human Gut Microbiome ↗SSRN Electronic Journal · 2020not yet assessed
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The Dutch Microbiome Project defines factors that shape the healthy gut microbiome ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Genomic evaluation of circulating proteins for drug target characterisation and precision medicine ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Stability of the Human Gut Virome and Effect of Gluten-Free Diet ↗SSRN Electronic Journal · 2020not yet assessed
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not yet assessed
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The Dutch Microbiome Project defines factors that shape the healthy gut microbiome ↗Research Square · 2020not yet assessed
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Identification, Heritability, and Relation With Gene Expression of Novel DNA Methylation Loci for Blood PressureUtrecht University Repository (Utrecht University) · 2020not yet assessed
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Evaluating the Utility of Multiple Trait Methods for Estimating Polygenic Risk ScoreseScholarship (California Digital Library) · 2020not yet assessed
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Characteristics, Components and Improving Suggestions of College Students' Leadership2020not yet assessed
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The gut-brain axis in bipolar disorder and schizophrenia – a target for precision psychiatry?University of Groningen research database (University of Groningen / Centre for Information Technology) · 2020not yet assessed
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The impact of intestinal permeability and intestinal microbiome on cerebral immunological activity and myelination in bipolar disorderUniversity of Groningen research database (University of Groningen / Centre for Information Technology) · 2020not yet assessed
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A cross-omics integrative study of metabolic signatures of chronic obstructive pulmonary disease ↗Työväentutkimus Vuosikirja · 2020not yet assessed
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Additional file 1 of A cross-omics integrative study of metabolic signatures of chronic obstructive pulmonary disease ↗Figshare · 2020not yet assessed
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Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases ↗Nature Genetics · 2019 · PMID 30778224not yet assessed
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Structural variation in the gut microbiome associates with host health ↗Nature · 2019 · PMID 30918406not yet assessed
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A Proinflammatory Gut Microbiota Increases Systemic Inflammation and Accelerates Atherosclerosis ↗Circulation Research · 2019 · PMID 30582442not yet assessed
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Intestinal microbiome composition and its relation to joint pain and inflammation ↗Nature Communications · 2019 · PMID 31653850not yet assessed
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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage ↗Nature Microbiology · 2019 · PMID 31285584not yet assessed
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Relationship between gut microbiota and circulating metabolites in population-based cohorts ↗Nature Communications · 2019 · PMID 31862950not yet assessed
-
Metabolomics Profile in Depression: A Pooled Analysis of 230 Metabolic Markers in 5283 Cases With Depression and 10,145 Controls ↗Biological Psychiatry · 2019 · PMID 31635762not yet assessed
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Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk ↗Circulation Research · 2019 · PMID 30971183not yet assessed
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Studying the gut virome in the metagenomic era: challenges and perspectives ↗BMC Biology · 2019 · PMID 31660953not yet assessed
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Megasphaera elsdenii Lactate Degradation Pattern Shifts in Rumen Acidosis Models ↗Frontiers in Microbiology · 2019 · PMID 30792704not yet assessed
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Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine ↗Neurology · 2019 · PMID 30944236not yet assessed
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Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn’s Disease Exacerbations ↗Journal of Crohn s and Colitis · 2019 · PMID 31066440not yet assessed
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Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease ↗European Journal of Human Genetics · 2019 · PMID 31591516not yet assessed
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SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects ↗PLoS ONE · 2019 · PMID 30703110not yet assessed
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Systems genetics approach reveals cross-talk between bile acids and intestinal microbes ↗PLoS Genetics · 2019 · PMID 31465439not yet assessed
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Omeprazole-Induced Dysbiosis Impacts Bile Acid Metabolism In Mice And Humans ↗Atherosclerosis · 2019not yet assessed
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Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet ↗Scientific Reports · 2019 · PMID 31628414not yet assessed
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Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease ↗Nature Microbiology · 2019 · PMID 30971771not yet assessed
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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement ↗Research Square · 2019not yet assessed
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OP01 In-depth characterisation of host genetics and gut microbiome unravels novel host–microbiome interactions in inflammatory bowel disease ↗Journal of Crohn s and Colitis · 2019not yet assessed
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149 – In-Depth Characterization of Host-Genetics and Gut Microbiome Unravels Novel Host-Microbiome Interactions in Inflammatory Bowel Disease ↗Gastroenterology · 2019not yet assessed
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Stop, Collaborate, and Listen: Facilitating Community, Connection, and Communication in the Online ClassroomSociety for Information Technology & Teacher Education International Conference · 2019not yet assessed
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Environment dominates over host genetics in shaping human gut microbiota ↗Nature · 2018 · PMID 29489753not yet assessed
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Gut microbiome structure and metabolic activity in inflammatory bowel disease ↗Nature Microbiology · 2018 · PMID 30531976not yet assessed
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Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome ↗Science Translational Medicine · 2018 · PMID 30567928not yet assessed
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Role of gut microbiota in chronic low‐grade inflammation as potential driver for atherosclerotic cardiovascular disease: a systematic review of human studies ↗Obesity Reviews · 2018 · PMID 30144260not yet assessed
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Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles ↗Gut Microbes · 2018 · PMID 30373468not yet assessed
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Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus ↗Journal of Autoimmunity · 2018 · PMID 30416033not yet assessed
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Pharmacomicrobiomics: a novel route towards personalized medicine? ↗Protein & Cell · 2018 · PMID 29705929not yet assessed
-
Individual variations in cardiovascular-disease-related protein levels are driven by genetics and gut microbiome ↗Nature Genetics · 2018 · PMID 30250126not yet assessed
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Lipopolysaccharide Lowers Cholesteryl Ester Transfer Protein by Activating F4/80 + Clec4f + Vsig4 + Ly6C − Kupffer Cell Subsets ↗Journal of the American Heart Association · 2018 · PMID 29525783not yet assessed
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Detection of stable community structures within gut microbiota co-occurrence networks from different human populations ↗PeerJ · 2018 · PMID 29441232not yet assessed
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Dysbiosis of the buccal mucosa microbiome in primary Sjögren’s syndrome patients ↗Lara D. Veeken · 2018 · PMID 30060225not yet assessed
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A system biology perspective on environment–host–microbe interactions ↗Human Molecular Genetics · 2018 · PMID 29668946not yet assessed
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Is gut microbiota a relevant and competitive dietary target for cardio-metabolic health? Proceedings of an expert workshop ↗Trends in Food Science & Technology · 2018not yet assessed
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Microbial Impact on Plasma Metabolites is Linked to the Cardiovascular Risk and Phenotypes ↗Atherosclerosis Supplements · 2018not yet assessed
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Changing Views on Living Organisms2018not yet assessed
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Author Correction: Individual variations in cardiovascular-disease-related protein levels are driven by genetics and gut microbiome ↗Nature Genetics · 2018 · PMID 30341443not yet assessed
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The non-coding genome in cancer ↗Non-coding RNA Investigation · 2018not yet assessed
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Host Genetics and Gut Microbiome: Challenges and Perspectives ↗Trends in Immunology · 2017 · PMID 28669638not yet assessed
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The influence of proton pump inhibitors and other commonly used medication on the gut microbiota ↗Gut Microbes · 2017 · PMID 28118083not yet assessed
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A liver‐specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis ↗Hepatology · 2017 · PMID 28073183not yet assessed
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Small player, large role: Microbial metabolic pathways associated with metabolic risk of cardiovascular diseaseJournal of Postgenomics Drug & Biomarker Development · 2017not yet assessed
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THE RELATED FACTORS OF SUCCESSFUL CATHETER REMOVAL IN A CHINESE HOME CARE POPULATION ↗Innovation in Aging · 2017not yet assessed
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Assessing the Impact of Study Abroad Experience on the Creative Abilities of Design Students.NCSU Libraries Repository (North Carolina State University Libraries) · 2017not yet assessed
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Population-level analysis of gut microbiome variation ↗Science · 2016 · PMID 27126039not yet assessed
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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity ↗Science · 2016 · PMID 27126040not yet assessed
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Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity ↗Cell · 2016 · PMID 27814509not yet assessed
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The effect of host genetics on the gut microbiome ↗Nature Genetics · 2016 · PMID 27694959not yet assessed
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Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease ↗Gut · 2016 · PMID 27802154not yet assessed
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not yet assessed
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Understanding human immune function using the resources from the Human Functional Genomics Project ↗Nature Medicine · 2016 · PMID 27490433not yet assessed
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Gut microbiome and lipid metabolism ↗Current Opinion in Lipidology · 2016 · PMID 27054442not yet assessed
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Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals ↗PLoS ONE · 2016 · PMID 27907186not yet assessed
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A GWAS meta-analysis suggests roles for xenobiotic metabolism and ion channel activity in the biology of stool frequency ↗Gut · 2016 · PMID 27473416not yet assessed
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87 Gene-Microbiome Interactions Underlying the Onset and the Clinical Phenotypes of Inflammatory Bowel Disease ↗Gastroenterology · 2016not yet assessed
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Proton pump inhibitors affect the gut microbiome ↗Gut · 2015 · PMID 26657899not yet assessed
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The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids ↗Circulation Research · 2015 · PMID 26358192not yet assessed
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Cell Specific eQTL Analysis without Sorting CellsPLoS Genetics · 2015 · PMID 25955312L1 90/100
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Gut microbiota composition associated with stool consistency ↗Gut · 2015 · PMID 26276682not yet assessed
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Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels ↗Genome Medicine · 2015 · PMID 25954321not yet assessed
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Plasma cholesteryl ester transfer protein is predominantly derived from Kupffer cells ↗Hepatology · 2015 · PMID 26174697not yet assessed
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The immunity–diet–microbiota axis in the development of metabolic syndrome ↗Current Opinion in Lipidology · 2015 · PMID 25692344not yet assessed
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Determining the association between adipokine expression in multiple tissues and phenotypic features of non-alcoholic fatty liver disease in obesity ↗Nutrition and Diabetes · 2015 · PMID 25664838not yet assessed
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Apple or Pear: Size and Shape Matter ↗Cell Metabolism · 2015 · PMID 25863240not yet assessed
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GWAS as a Driver of Gene Discovery in Cardiometabolic Diseases ↗Trends in Endocrinology and Metabolism · 2015 · PMID 26596674not yet assessed
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GWAS as a Driver of Gene Discovery in Cardiometabolic2015not yet assessed
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Cell Specific eQTL Analysis without Sorting CellsNorthumbria Research Link (Northumbria University) · 2015not yet assessed
-
Genetic and epigenetic regulation of gene expression in fetal and adult human livers ↗BMC Genomics · 2014 · PMID 25282492not yet assessed
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Are hypertriglyceridemia and low HDL causal factors in the development of insulin resistance? ↗Atherosclerosis · 2014 · PMID 24529133not yet assessed
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Systems genetics: From GWAS to disease pathways ↗Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · 2014 · PMID 24798234not yet assessed
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Pleiotropic Effects of Lipid Genes on Plasma Glucose, HbA1c, and HOMA-IR Levels ↗Diabetes · 2014 · PMID 24722249not yet assessed
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The genome revolution and its role in understanding complex diseases ↗Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · 2014 · PMID 24834846not yet assessed
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Extraintestinal Manifestations and Complications in Inflammatory Bowel Disease ↗Inflammatory Bowel Diseases · 2014 · PMID 24739630not yet assessed
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Correlation of Genetic Risk and Messenger RNA Expression in a Th17/IL23 Pathway Analysis in Inflammatory Bowel Disease ↗Inflammatory Bowel Diseases · 2014 · PMID 24662057not yet assessed
-
Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels ↗bioRxiv (Cold Spring Harbor Laboratory) · 2014not yet assessed
-
Cell specific eQTL analysis without sorting cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2014not yet assessed
-
Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression ↗PLoS Genetics · 2013 · PMID 23341781not yet assessed
-
PS13 - 7. Plasma cholesteryl ester transfer protein: a biomarker for hepatic macrophages ↗Nederlands Tijdschrift voor Diabetologie · 2013not yet assessed
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Resolving Variants of Unknown Significance Through Large-Scale RNA-seqUniversity of Groningen research database (University of Groningen / Centre for Information Technology) · 2013not yet assessed
-
Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression ↗PLoS Genetics · 2012 · PMID 22275870not yet assessed
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Genetics of coronary artery disease: Genome-wide association studies and beyond ↗Atherosclerosis · 2012 · PMID 22698794not yet assessed
-
Limited Evidence for Parent-of-Origin Effects in Inflammatory Bowel Disease Associated Loci ↗PLoS ONE · 2012 · PMID 23028907not yet assessed
-
Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure ↗Nature Genetics · 2011 · PMID 21909110not yet assessed
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Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA ↗PLoS Genetics · 2011 · PMID 21829388not yet assessed
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Three ulcerative colitis susceptibility loci are associated with primary sclerosing cholangitis and indicate a role for IL2, REL, and CARD9 ↗Hepatology · 2011 · PMID 21425313not yet assessed
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Multi-ethnic studies in complex traits ↗Human Molecular Genetics · 2011 · PMID 21890495not yet assessed
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PS4 - 19. Expression of lipid genes, but not adipokine genes, in visceral adipose tissue is related to liver damage in obese individuals ↗Nederlands Tijdschrift voor Diabetologie · 2011not yet assessed
-
Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction ↗Nature Genetics · 2010 · PMID 21076409not yet assessed
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Analysis of SNPs with an effect on gene expression identifies UBE2L3 and BCL3 as potential new risk genes for Crohn's disease ↗Human Molecular Genetics · 2010 · PMID 20601676not yet assessed
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Staphylococcal Superantigen-like Protein 5 (SSL5), a Prothrombotic Exotoxin of Staphylococcus aureus Infections and Potential Novel Treatment Strategies ↗Heart Lung and Circulation · 2010not yet assessed
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System-wide molecular evidence for phenotypic buffering in Arabidopsis ↗Nature Genetics · 2009 · PMID 19169256not yet assessed
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Analysis of HLA and Non-HLA Alleles Can Identify Individuals at High Risk for Celiac Disease ↗Gastroenterology · 2009 · PMID 19454285not yet assessed
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Common Genetic Variation Near the Phospholamban Gene Is Associated with Cardiac Repolarisation: Meta-Analysis of Three Genome-Wide Association Studies ↗PLoS ONE · 2009 · PMID 19587794not yet assessed
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Defining gene and QTL networks ↗Current Opinion in Plant Biology · 2009 · PMID 19196544not yet assessed
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designGG: an R-package and web tool for the optimal design of genetical genomics experiments ↗BMC Bioinformatics · 2009 · PMID 19538731not yet assessed
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Genetical Genomics: Spotlight on QTL Hotspots ↗PLoS Genetics · 2008 · PMID 18949031not yet assessed
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Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana ↗Genome biology · 2008 · PMID 18710526not yet assessed
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Optimal Design of Genetic Studies of Gene Expression With Two-Color Microarrays in Outbred Crosses ↗Genetics · 2008 · PMID 18791249not yet assessed
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Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci ↗Proceedings of the National Academy of Sciences · 2007 · PMID 17237218not yet assessed
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MetaNetwork: a computational protocol for the genetic study of metabolic networks ↗Nature Protocols · 2007 · PMID 17406631not yet assessed
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Developing learner autonomy for oral language on the base of emergent metacognitionUS-China education review · 2007not yet assessed
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Bioinformatics for genetical genomics: novel experimental design and algorithmsUniversity of Groningen research database (University of Groningen / Centre for Information Technology) · 2007not yet assessed
-
The genetics of plant metabolism ↗Nature Genetics · 2006 · PMID 16751770not yet assessed
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Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans ↗PLoS Genetics · 2006 · PMID 17196041not yet assessed
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Optimal Design and Analysis of Genetic Studies on Gene Expression ↗Genetics · 2005 · PMID 16361243not yet assessed
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Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans ↗PLoS Genetics · 2005not yet assessed
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[Stat 3 signal transduction pathway correlates with proliferation of vascular smooth muscle cells of rats]. ↗PubMed · 2005 · PMID 16266461not yet assessed
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SIGNAL TRANSDUCTION OF BONE MORPHOGENETIC PROTEINS IN OSTEOBLAST DIFFERENTIATION ↗Journal of Bone and Joint Surgery · 2003 · PMID 12925607not yet assessed
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[Gene marking of human colon cancer LoVo cells with enhanced green fluorescent protein]. ↗PubMed · 2001 · PMID 11859709not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Fu J” paper on PubMed ↗