Tim Conrad

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Reusable building blocks in biological systems.
  2018 L1 82/100

1 assessed by us (1 reproduced) · 150 not yet assessed — every PubMed paper on record, linked below.

• A hybrid ABM-PDE framework for real-world infectious disease simulations ↗

  Applied Mathematical Modelling · 2026
  not yet assessed
• A Human-in-the-Loop, LLM-Centered Architecture for Knowledge-Graph Question Answering ↗

  Open MIND · 2026
  not yet assessed
• A Human-in-the-Loop, LLM-Centered Architecture for Knowledge-Graph Question Answering

  arXiv (Cornell University) · 2026
  not yet assessed
• VeloTree: Inferring single-cell trajectories from RNA velocity fields with varifold distances ↗

  arXiv (Cornell University) · 2026
  not yet assessed
• VeloTree: Inferring single-cell trajectories from RNA velocity fields with varifold distances

  arXiv (Cornell University) · 2026
  not yet assessed
• A hybrid ABM-PDE framework for real-world infectious disease simulations ↗

  Applied Mathematical Modelling · 2026
  not yet assessed
• Integrating Agent-Based and Compartmental Models for Infectious Disease Modeling: A Novel Hybrid Approach ↗

  Journal of Artificial Societies and Social Simulation · 2025
  not yet assessed
• Combining LLMs and Knowledge Graphs to Reduce Hallucinations in Biomedical Question Answering ↗

  BioMedInformatics · 2025
  not yet assessed
• Self-supervised pre-training with joint-embedding predictive architecture boosts ECG classification performance ↗

  Computers in Biology and Medicine · 2025 · PMID 40749448
  not yet assessed
• Hybrid PDE–ODE models for efficient simulation of infection spread in epidemiology ↗

  Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences · 2025
  not yet assessed
• Random walk based snapshot clustering for detecting community dynamics in temporal networks ↗

  Scientific Reports · 2025 · PMID 40628831
  not yet assessed
• Tree Inference with Varifold Distances ↗

  Lecture notes in computer science · 2025
  not yet assessed
• Federated Learning With Deep Neural Networks: A Privacy-Preserving Approach to Enhanced ECG Classification ↗

  IEEE Journal of Biomedical and Health Informatics · 2024 · PMID 39008397
  not yet assessed
• Characterising information gains and losses when collecting multiple epidemic model outputs ↗

  Epidemics · 2024 · PMID 38643546
  not yet assessed
• Clinical Effectiveness of Ritonavir-Boosted Nirmatrelvir—A Literature Review ↗

  Advances in respiratory medicine · 2024 · PMID 38247553
  not yet assessed
• Disease Burden and Inpatient Management of Children with Acute Respiratory Viral Infections during the Pre-COVID Era in Germany: A Cost-of-Illness Study ↗

  Viruses · 2024 · PMID 38675850
  not yet assessed
• Neural parameter calibration and uncertainty quantification for epidemic forecasting ↗

  PLoS ONE · 2024 · PMID 39418246
  not yet assessed
• Making Mathematical Research Data FAIR: Pathways to Improved Data Sharing ↗

  Scientific Data · 2024 · PMID 38909043
  not yet assessed
• Combining LLMs and Knowledge Graphs to Reduce Hallucinations in Question Answering ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Integrating Agent-Based and Compartmental Models for Infectious Disease Modeling: A Novel Hybrid Approach ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Dataset for paper "Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts" ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2024
  not yet assessed
• Dataset for paper "Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts" ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2024
  not yet assessed
• Hybrid PDE-ODE Models for Efficient Simulation of Infection Spread in Epidemiology ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• FELRec: efficient handling of item cold-start with dynamic representation learning in recommender systems ↗

  International Journal of Data Science and Analytics · 2024
  not yet assessed
• Towards More Effective Table-to-Text Generation: Assessing In-Context Learning and Self-Evaluation with Open-Source Models ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Self-Supervised Pre-Training with Joint-Embedding Predictive Architecture Boosts ECG Classification Performance ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Automated Medical Report Generation for ECG Data: Bridging Medical Text and Signal Processing with Deep Learning ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Random walk based snapshot clustering for detecting community dynamics in temporal networks ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Explicit modeling of antibody levels for infectious disease simulations in the context of SARS-CoV-2 ↗

  iScience · 2023 · PMID 37654471
  not yet assessed
• Understanding microbiome dynamics via interpretable graph representation learning ↗

  Scientific Reports · 2023 · PMID 36739319
  not yet assessed
• Enhancing Electrocardiogram (ECG) Analysis of Implantable Cardiac Monitor Data: An Efficient Pipeline for Multi-Label Classification ↗

  Machine Learning and Knowledge Extraction · 2023
  not yet assessed
• Effectiveness of Paxlovid - a review ↗

  medRxiv · 2023
  not yet assessed
• Disease Burden and Inpatient Management of Children with Acute Respiratory Viral Infections during the Pre-COVID Era in Germany: A Cost-of-Illness Study ↗

  Preprints.org · 2023
  not yet assessed
• Characterising information gains and losses when collecting multiple epidemic model outputs ↗

  medRxiv · 2023
  not yet assessed
• Bravo MaRDI: A Wikibase Powered Knowledge Graph on Mathematics ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Making Mathematical Research Data FAIR: A Technology Overview ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Supplementary Data from Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated with Pancreatic Cancer ↗

  2023
  not yet assessed
• Data from Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated with Pancreatic Cancer ↗

  2023
  not yet assessed
• Data from Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated with Pancreatic Cancer ↗

  2023
  not yet assessed
• Supplementary Data from Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated with Pancreatic Cancer ↗

  2023
  not yet assessed
• Explicit Modelling of Antibody Levels for Infectious Disease Simulations in the Context of SARS-CoV-2 ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Enhancing ECG Analysis of Implantable Cardiac Monitor Data: An Efficient Pipeline for Multi-Label Classification ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Neural parameter calibration and uncertainty quantification for epidemic forecasting ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Predicting Coma Recovery after Cardiac Arrest with Residual Neural Networks ↗

  Computing in cardiology · 2023
  not yet assessed
• An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2022 · PMID 35007196
  not yet assessed
• Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2022 · PMID 37015402
  not yet assessed
• Linking digital surveillance and in-depth virology to study clinical patterns of viral respiratory infections in vulnerable patient populations ↗

  iScience · 2022 · PMID 35573195
  not yet assessed
• Dictionary learning allows model-free pseudotime estimation of transcriptomic data ↗

  BMC Genomics · 2022 · PMID 35033004
  not yet assessed
• Szenarien für den Verlauf der SARS-CoV-2-Pandemie im Winter 2022/23 - Ergebnisse eines Workshops des Modellierungsnetzes für schwere Infektionskrankheiten (Modellierungsnetz) ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2022
  not yet assessed
• Understanding microbiome dynamics via interpretable graph representation learning ↗

  arXiv (Cornell University) · 2022
  not yet assessed
• FELRec: Efficient Handling of Item Cold-Start With Dynamic Representation Learning in Recommender Systems ↗

  arXiv (Cornell University) · 2022
  not yet assessed
• Transfer learning for ECG classification ↗

  Scientific Reports · 2021 · PMID 33664343
  not yet assessed
• eIF5A hypusination, boosted by dietary spermidine, protects from premature brain aging and mitochondrial dysfunction ↗

  Cell Reports · 2021 · PMID 33852845
  not yet assessed
• Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts ↗

  PLoS ONE · 2021 · PMID 33887760
  not yet assessed
• MODUS-COVID Bericht vom 09.04.2021 ↗

  DepositOnce · 2021
  not yet assessed
• A Convergent Discretization Method for Transition Path Theory for Diffusion Processes ↗

  Multiscale Modeling and Simulation · 2021
  not yet assessed
• An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• MODUS-COVID Bericht vom 05.02.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 15.01.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 26.02.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 19.03.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 21.05.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 30.04.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 18.06.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 16.07.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 03.09.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 27.08.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 24.09.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 22.10.2021 ↗

  DepositOnce · 2021
  not yet assessed
• MODUS-COVID Bericht vom 19.11.2021 ↗

  DepositOnce · 2021
  not yet assessed
• Combining Phage Display and Next-Generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces ↗

  Journal of the American Chemical Society · 2020 · PMID 32460497
  not yet assessed
• GraphKKE: graph Kernel Koopman embedding for human microbiome analysis ↗

  Refubium (Universitätsbibliothek der Freien Universität Berlin) · 2020
  not yet assessed
• Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts ↗

  medRxiv · 2020
  not yet assessed
• MODUS-COVID Bericht vom 02.10.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 11.09.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 13.11.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 04.12.2020 ↗

  DepositOnce · 2020
  not yet assessed
• Dictionary learning for transcriptomics data reveals type-specific gene modules in a multi-class setting ↗

  it - Information Technology · 2020
  not yet assessed
• NGS4Mater.Sci.: Phage Sequence Analysis of Illumina Next Generation Sequencing Data ↗

  edoc Publication server (Humboldt University of Berlin) · 2020
  not yet assessed
• MODUS-COVID Bericht vom 20.05.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 05.06.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 19.06.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 03.07.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 24.07.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 21.08.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 23.10.2020 ↗

  DepositOnce · 2020
  not yet assessed
• MODUS-COVID Bericht vom 18.12.2020 ↗

  DepositOnce · 2020
  not yet assessed
• Graph Kernel Koopman Embedding for Human Microbiome Analysis

  2020
  not yet assessed
• of Sparse Proteomics Analysis â a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data ↗

  Figshare · 2019
  not yet assessed
• Learning Chemical Reaction Networks from Trajectory Data ↗

  SIAM Journal on Applied Dynamical Systems · 2019
  not yet assessed
• EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma ↗

  PLoS ONE · 2019 · PMID 30703089
  not yet assessed
• Deep Learning for Proteomics Data for Feature Selection and Classification ↗

  Lecture notes in computer science · 2019
  not yet assessed
• Toma y Daca: Transculturación y presencia de escritores chino-latinoamericanos [Give and Take: Transculturation and the Presence of Chinese-Latin American writers] by Huei Lan Yen (review) ↗

  Rocky Mountain review/The Rocky Mountain review · 2019
  not yet assessed
• Can we distinguish respiratory viral infections based on clinical features? A prospective pediatric cohort compared to systematic literature review ↗

  Reviews in Medical Virology · 2018 · PMID 30043515
  not yet assessed
• Are we missing respiratory viral infections in infants and children? Comparison of a hospital-based quality management system with standard of care ↗

  Clinical Microbiology and Infection · 2018 · PMID 29906596
  not yet assessed
• Associations of postoperative mortality with the time of day, week and year ↗

  Anaesthesia · 2018 · PMID 29473682
  not yet assessed
• Reusable building blocks in biological systems

  Journal of The Royal Society Interface · 2018 · PMID 30958230
  L1 82/100
• Estimation of the Near-Surface Air Temperature during the Day and Nighttime from MODIS in Berlin, Germany ↗

  International Journal of Advanced Remote Sensing and GIS · 2018
  not yet assessed
• EMT network-based feature selection improves prognosis prediction in lung adenocarcinoma ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Autobiographical Writing in Latin America: Folds of the Self by Sergio R. Franco (review) ↗

  Rocky Mountain review/The Rocky Mountain review · 2018
  not yet assessed
• Additional file 4: of Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin ↗

  Figshare · 2018
  not yet assessed
• Additional file 5: of Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin ↗

  Figshare · 2018
  not yet assessed
• Additional file 1: of Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin ↗

  Figshare · 2018
  not yet assessed
• Additional file 3: of Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin ↗

  Figshare · 2018
  not yet assessed
• Educating parents about the vaccination status of their children: A user-centered mobile application ↗

  Preventive Medicine Reports · 2017 · PMID 28127527
  not yet assessed
• Influenza and other respiratory viruses: standardizing disease severity in surveillance and clinical trials ↗

  Expert Review of Anti-infective Therapy · 2017 · PMID 28277820
  not yet assessed
• Epithelial Mesenchymal Transition Network-Based Feature Engineering in Lung Adenocarcinoma Prognosis Prediction Using Multiple Omic Data ↗

  Genomics and Computational Biology · 2017
  not yet assessed
• Better Interpretable Models for Proteomics Data Analysis Using Rule-Based Mining ↗

  Lecture notes in computer science · 2017
  not yet assessed
• Practically efficient methods for performing bit-reversed permutation in C++11 on the x86-64 architecture ↗

  arXiv (Cornell University) · 2017
  not yet assessed
• Additional file 1 of Sparse Proteomics Analysis â a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data ↗

  Figshare · 2017
  not yet assessed
• Sparse Proteomics Analysis – a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data ↗

  BMC Bioinformatics · 2017 · PMID 28274197
  not yet assessed
• Acfs: accurate circRNA identification and quantification from RNA-Seq data ↗

  Scientific Reports · 2016 · PMID 27929140
  not yet assessed
• Enabling Precision Medicine With Digital Case Classification at the Point-of-Care ↗

  EBioMedicine · 2016 · PMID 26981582
  not yet assessed
• Innovative Digital Tools and Surveillance Systems for the Timely Detection of Adverse Events at the Point of Care: A Proof-of-Concept Study ↗

  Drug Safety · 2016 · PMID 27350063
  not yet assessed
• Epithelial-Mesenchymal Transition Regulatory Network-Based Feature Selection in Lung Cancer Prognosis Prediction ↗

  Lecture notes in computer science · 2016
  not yet assessed
• An inception cohort study assessing the role of bacterial co-infections in children with influenza and ILI and a clinical decision model for stringent antibiotic use

  2016
  not yet assessed
• Big Data – Die Analyse großer Datenmengen in der Medizin ↗

  2016
  not yet assessed
• Decomposing biological systems into reusable modules reveals characteristic module size distributions

  2016
  not yet assessed
• Human Parechovirus Infections Associated with Seizures and Rash in Infants and Toddlers ↗

  The Pediatric Infectious Disease Journal · 2015 · PMID 26181895
  not yet assessed
• An Inception Cohort Study Assessing the Role of Pneumococcal and other Bacterial Pathogens in Children with Influenza and ILI and a Clinical Decision Model for Stringent Antibiotic Use ↗

  Antiviral Therapy · 2015 · PMID 26867096
  not yet assessed
• Finding metastable states in real-world time series with recurrence networks ↗

  Physica A Statistical Mechanics and its Applications · 2015
  not yet assessed
• Minimum-overlap Clusterings and the Sparsity of Overcomplete Decompositions of Binary Matrices ↗

  Procedia Computer Science · 2015
  not yet assessed
• Non-convex regularization for supervised learning

  2015
  not yet assessed
• Human Parechovirus Infections Associated with Seizures and Rash: A Syndromic Surveillance Study in Children

  2015
  not yet assessed
• Modularity revisited: A novel dynamics-based concept for decomposing complex networks ↗

  Journal of Computational Dynamics · 2014
  not yet assessed
• SAIMeR: Self-adapted method for the identification of metastable states in real-world time series

  arXiv (Cornell University) · 2014
  not yet assessed
• Finding metastable states in real-world time series with recurrence networks ↗

  arXiv (Cornell University) · 2014
  not yet assessed
• Finding metastable states in real-world time series with recurrence\n networks ↗

  arXiv (Cornell University) · 2014
  not yet assessed
• Accuracy of the unified approach in maternally influenced traits - illustrated by a simulation study in the honey bee (Apis mellifera) ↗

  BMC Genetics · 2013 · PMID 23647776
  not yet assessed
• Towards a Personalised Approach to Managing Influenza Infections in Infants and Children – Food for Thought and a Note on Oseltamivir ↗

  Infectious Disorders - Drug Targets · 2013 · PMID 23675924
  not yet assessed
• Finding Modules in Networks with Non-modular Regions ↗

  Lecture notes in computer science · 2013
  not yet assessed
• Pancreatic carcinoma, pancreatitis, and healthy controls: metabolite models in a three-class diagnostic dilemma ↗

  Metabolomics · 2012 · PMID 23678345
  not yet assessed
• Simulating a base population in honey bee for molecular genetic studies ↗

  Genetics Selection Evolution · 2012 · PMID 22520469
  not yet assessed
• Random Walks on Complex Modular Networks

  2012
  not yet assessed
• Inferring Proteolytic Processes from Mass Spectrometry Time Series Data Using Degradation Graphs ↗

  PLoS ONE · 2012 · PMID 22815782
  not yet assessed
• Serum amino acid profiles and their alterations in colorectal cancer ↗

  Metabolomics · 2011 · PMID 22833708
  not yet assessed
• Turbo Flow: Using Plan for Every Part (PFEP) to Turbo Charge Your Supply Chain

  2010
  not yet assessed
• Turbo Flow ↗

  Productivity Press eBooks · 2010
  not yet assessed
• Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated with Pancreatic Cancer ↗

  Clinical Cancer Research · 2009 · PMID 19470732
  not yet assessed
• Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry: serum protein profiling in seminoma patients ↗

  World Journal of Urology · 2009 · PMID 19529944
  not yet assessed
• Bioinformatics Support for Mass Spectrometry Quality Control

  Wiley-VCH eBooks · 2008
  not yet assessed
• New statistical algorithms for the analysis of mass spectrometry time-of- flight mass data with applications in clinical diagnostics ↗

  Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · 2008
  not yet assessed
• Bioinformatics ↗

  2008
  not yet assessed
• SERUM PROTEOMIC PROFILING BY SURFACE-ENHANCED LASER DESORPTION/IONIZATION TIME-OF-FLIGHT MASS SPECTROMETRY IN TESTICULAR GERM CELL CANCER PATIENTS ↗

  European Urology Supplements · 2008
  not yet assessed
• Honours Project 2004- “Metabolic Pathways” Literature Review

  2008
  not yet assessed
• Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level ↗

  Lecture notes in computer science · 2006
  not yet assessed
• New statistical algorithms for clinical proteomics ↗

  DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2006
  not yet assessed
• New Approaches for Visualizing and Analyzing Metabolic Pathways

  2004
  not yet assessed
• Berechnung von freien Energie Flächen am Beispiel des Alanin-Dipeptides

  2003
  not yet assessed
• Wer die Wahl hat... ↗

  Call Center Profi · 2001
  not yet assessed
• Erfolgskriterien für die Beraterwahl ↗

  Bankmagazin · 2001
  not yet assessed