Junbo Duan

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
  2024 L1 90/100

1 assessed by us (1 reproduced) · 65 not yet assessed — every PubMed paper on record, linked below.

• Establishment of an amino acid metabolism related signature for prognostic and therapeutic sensitivity prediction in breast cancer by machine learning ↗

  PLoS ONE · 2026 · PMID 41511940
  not yet assessed
• MSigSeg: An R package for multiple signals segmentation ↗

  Computer Methods and Programs in Biomedicine · 2025 · PMID 40199111
  not yet assessed
• On the core segmentation algorithms of copy number variation detection tools ↗

  Briefings in Bioinformatics · 2024 · PMID 38340093
  not yet assessed
• Alternative polyadenylation quantitative trait loci contribute to acute myeloid leukemia risk genes regulation ↗

  Leukemia Research · 2024 · PMID 38640632
  not yet assessed
• LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing

  Briefings in Bioinformatics · 2024 · PMID 38877886
  L1 90/100
• Comparative study of non-convex penalties and related algorithms in compressed sensing ↗

  Digital Signal Processing · 2023
  not yet assessed
• The comparison and analysis of the surface drought monitoring model based on Xinjiang ↗

  2023
  not yet assessed
• MSigSeg: Multiple SIGnal SEGmentation ↗

  2023
  not yet assessed
• Accurate detection of atrial fibrillation events with R-R intervals from ECG signals ↗

  PLoS ONE · 2022 · PMID 35925979
  not yet assessed
• Trends of non-melanoma skin cancer incidence in Hong Kong and projection up to 2030 based on changing demographics ↗

  Annals of Medicine · 2022 · PMID 36519234
  not yet assessed
• Laser-induced photoexcited audible sound effect based on reticular 2-bromo-2-methylpropionic acid modified Fe ₃ O ₄ nanoparticle aggregates ↗

  Nanoscale · 2022 · PMID 36342384
  not yet assessed
• APAview: A web-based platform for alternative polyadenylation analyses in hematological cancers ↗

  Frontiers in Genetics · 2022 · PMID 36035147
  not yet assessed
• HOPS: A Fast Algorithm for Segmenting Piecewise Polynomials of Arbitrary Orders ↗

  IEEE Access · 2021
  not yet assessed
• Fitting of Atomic Force Microscopy Force Curves with a Sparse Representation Model ↗

  Mathematical Problems in Engineering · 2021
  not yet assessed
• Smoothing of Time-Varying Graph With the Generalized LASSO ↗

  IEEE Access · 2021
  not yet assessed
• Comparative study of whole exome sequencing-based copy number variation detection tools ↗

  BMC Bioinformatics · 2020 · PMID 32138645
  not yet assessed
• CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2019 · PMID 31180897
  not yet assessed
• ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2019 · PMID 31751246
  not yet assessed
• CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data ↗

  IEEE Access · 2019
  not yet assessed
• A Joint Least Squares and Least Absolute Deviation Model ↗

  IEEE Signal Processing Letters · 2019
  not yet assessed
• Detection of False-Positive Deletions from the Database of Genomic Variants ↗

  BioMed Research International · 2019 · PMID 31080831
  not yet assessed
• Detecting breakpoints in global temperature ↗

  2019
  not yet assessed
• Supplementary material to "Detecting breakpoints in global temperature" ↗

  2019
  not yet assessed
• CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2018 · PMID 30489272
  not yet assessed
• SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms ↗

  IEEE Transactions on Computational Biology and Bioinformatics · 2018 · PMID 30334804
  not yet assessed
• A Parallelizable Framework for Segmenting Piecewise Signals ↗

  IEEE Access · 2018
  not yet assessed
• Modeling ramp-hold indentation measurements based on Kelvin–Voigt fractional derivative model ↗

  Measurement Science and Technology · 2017 · PMID 30250357
  not yet assessed
• Pulse-Inversion Subharmonic Ultrafast Active Cavitation Imaging in Tissue Using Fast Eigenspace-Based Adaptive Beamforming and Cavitation Deconvolution ↗

  IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control · 2017 · PMID 28796605
  not yet assessed
• Generalized LASSO with under-determined regularization matrices ↗

  Signal Processing · 2016 · PMID 27346902
  not yet assessed
• Increasing Axial Resolution of Ultrasonic Imaging With a Joint Sparse Representation Model ↗

  IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control · 2016 · PMID 27913325
  not yet assessed
• Non-Invasive Von Mises Strain Imaging for Longitudinal Artery Wall ↗

  Journal of Medical Imaging and Health Informatics · 2016
  not yet assessed
• The Next Generation Sequencing and Applications in Clinical Research ↗

  Translational bioinformatics · 2016
  not yet assessed
• Homotopy Based Algorithms for $\ell _{\scriptscriptstyle 0}$-Regularized Least-Squares ↗

  IEEE Transactions on Signal Processing · 2015
  not yet assessed
• A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data ↗

  IEEE Transactions on Biomedical Engineering · 2015 · PMID 26258935
  not yet assessed
• Discover layered structure in ultrasound images with a joint sparse representation model ↗

  2015
  not yet assessed
• An optimal method to segment piecewise poisson distributed signals with application to sequencing data ↗

  2015 · PMID 26737773
  not yet assessed
• Pulse inversion based multi-subharmonic composite cavitation imaging ↗

  2015
  not yet assessed
• Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs ↗

  NeuroImage · 2014 · PMID 24530838
  not yet assessed
• Common Copy Number Variation Detection From Multiple Sequenced Samples ↗

  IEEE Transactions on Biomedical Engineering · 2014 · PMID 24557694
  not yet assessed
• Population clustering based on copy number variations detected from next generation sequencing data ↗

  Journal of Bioinformatics and Computational Biology · 2014 · PMID 25152046
  not yet assessed
• $\ell_2$-$\ell_0$ regularization path tracking algorithms.

  arXiv (Cornell University) · 2014
  not yet assessed
• ℓ 2 -ℓ 0 regularization path tracking algorithms

  2014
  not yet assessed
• Comparative Studies of Copy Number Variation Detection Methods for Next-Generation Sequencing Technologies ↗

  PLoS ONE · 2013 · PMID 23527109
  not yet assessed
• CNV-TV: A robust method to discover copy number variation from short sequencing reads ↗

  BMC Bioinformatics · 2013 · PMID 23634703
  not yet assessed
• Integrating fMRI and SNP data for biomarker identification for schizophrenia with a sparse representation based variable selection method ↗

  BMC Medical Genomics · 2013 · PMID 24565219
  not yet assessed
• Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach ↗

  EURASIP Journal on Bioinformatics and Systems Biology · 2013 · PMID 23311594
  not yet assessed
• Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNP data ↗

  2013
  not yet assessed
• Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection ↗

  2013
  not yet assessed
• Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs ↗

  2012
  not yet assessed
• On LARS/Homotopy Equivalence Conditions for Over-Determined LASSO ↗

  IEEE Signal Processing Letters · 2012
  not yet assessed
• Detection of common copy number variation with application to population clustering from next generation sequencing data ↗

  2012 · PMID 23366124
  not yet assessed
• Copy number variation estimation from multiple next-generation sequencing samples ↗

  2012
  not yet assessed
• Sparse Representation Based Clustering for Integrated Analysis of Gene Copy Number Variation and Gene Expression Date.

  Int. J. Comput. Their Appl. · 2012
  not yet assessed
• From Bernoulli–Gaussian Deconvolution to Sparse Signal Restoration ↗

  IEEE Transactions on Signal Processing · 2011
  not yet assessed
• Automated Force Volume Image Processing for Biological Samples ↗

  PLoS ONE · 2011 · PMID 21559483
  not yet assessed
• A COMPRESSED SENSING BASED APPROACH FOR SUBTYPING OF LEUKEMIA FROM GENE EXPRESSION DATA ↗

  Journal of Bioinformatics and Computational Biology · 2011 · PMID 21976380
  not yet assessed
• Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization ↗

  2011
  not yet assessed
• A sufficient condition on monotonic increase of the number of nonzero entry in the optimizer of L1 norm penalized least-square problem ↗

  arXiv (Cornell University) · 2011
  not yet assessed
• Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach ↗

  2011
  not yet assessed
• Restoration and separation of piecewise polynomial signals. Application to Atomic Force Microscopy

  theses.fr (ABES) · 2010
  not yet assessed
• Force curve segmentation by piecewise polynomial approximation: mathematical formulation and complete structure of the algorithm

  HAL (Le Centre pour la Communication Scientifique Directe) · 2010
  not yet assessed
• A continuation approach to estimate a solution path of mixed L2-L0 minimization problems

  HAL (Le Centre pour la Communication Scientifique Directe) · 2009
  not yet assessed
• On the properties of the solution path of the constrained and penalized L2-L0 problems

  HAL (Le Centre pour la Communication Scientifique Directe) · 2009
  not yet assessed
• Détection conjointe de discontinuités d'ordres différents dans un signal par minimisation de critère L2-L0

  HAL (Le Centre pour la Communication Scientifique Directe) · 2009
  not yet assessed
• Problèmes d'inversion de données en imagerie de force atomique

  HAL (Le Centre pour la Communication Scientifique Directe) · 2008
  not yet assessed
• Sparse representation of a force spectrum and a force-volume image

  HAL (Le Centre pour la Communication Scientifique Directe) · 2008
  not yet assessed