Hamid Ashrafi
Reproducibility track record
1
assessed papers
91/100
mean reproducibility
1
reproduced (C1–C2)
0
flagged
0
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
—
Funders
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Frequent co-authors
Amanda M. Hulse‐Kemp 1Joshua A. Udall 1Allen Van Deynze 1David M. Stelly 1Mark D. Huynh 1Zach S. Liechty 1Justin T. Page 1Jonathan F. Wendel 1Kara Grupp 1
Institutions
Brigham Young University 1Iowa State University 1University of California, Davis 1
Geography (author institutions)
US 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
Complete publication record (96)
Request a reproduction →1 assessed by us (1 reproduced) · 95 not yet assessed — every PubMed paper on record, linked below.
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The control of prickle formation in <i>Rubus</i> ↗PLANT PHYSIOLOGY · 2026 · PMID 42508810not yet assessed
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Genetic control of prickles in tetraploid blackberry ↗G3 Genes Genomes Genetics · 2025 · PMID 40108825not yet assessed
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Identification of late blight resistance QTLs in an interspecific RIL population of tomato via genotyping-by-sequencing ↗Molecular Breeding · 2025 · PMID 40206222not yet assessed
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Optimizing regeneration systems for highbush blueberries ↗Acta Horticulturae · 2025not yet assessed
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Development of a targeted genotyping platform for reproducible results within tetraploid and hexaploid blueberry ↗Frontiers in Horticulture · 2024not yet assessed
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Open-Source High-Throughput Phenotyping for Blueberry Yield and Maturity Prediction Across Environments: Neural Network Model and Labeled Dataset for Breeders ↗Horticulturae · 2024not yet assessed
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Systematics and Evolution of Vaccinium Sect. Cyanococcus (Ericaceae): Progress and Prospects ↗Rhodora · 2024not yet assessed
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Anecdote of homozygosity in black raspberry (<i>Rubus occidentalis</i>) ↗Acta Horticulturae · 2024not yet assessed
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Genetic Control of Prickles in Tetraploid Blackberry ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Genome-wide association identifies key loci controlling blackberry postharvest quality ↗Frontiers in Plant Science · 2023 · PMID 37351206not yet assessed
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A multiplexed plant–animal SNP array for selective breeding and species conservation applications ↗G3 Genes Genomes Genetics · 2023 · PMID 37565490not yet assessed
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There and back again; historical perspective and future directions for <i>Vaccinium</i> breeding and research studies ↗Horticulture Research · 2022 · PMID 35611183not yet assessed
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Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (<i>Vaccinium corymbosum</i>) ↗New Phytologist · 2022 · PMID 35962608not yet assessed
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A chromosome-length genome assembly and annotation of blackberry ( <i>Rubus argutus</i> , cv. “Hillquist”) ↗G3 Genes Genomes Genetics · 2022 · PMID 36331334not yet assessed
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Nuclear DNA contents and ploidy levels of North American Vaccinium species and interspecific hybrids ↗Scientia Horticulturae · 2022not yet assessed
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A first complete phylogenomic hypothesis for diploid blueberries (<i>Vaccinium</i> section <i>Cyanococcus</i>) ↗American Journal of Botany · 2022 · PMID 36109839not yet assessed
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Identification of late blight resistance quantitative trait loci in <i>Solanum pimpinellifolium</i> accession PI 270441 ↗The Plant Genome · 2022 · PMID 35962567not yet assessed
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RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry ↗Frontiers in Genetics · 2022 · PMID 35360413not yet assessed
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A multiplexed plant-animal SNP array for selective breeding and species conservation applications ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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A chromosome-length genome assembly and annotation of blackberry ( <i>Rubus argutus</i> , cv. ‘Hillquist’) ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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An optimized protocol for stepwise optimization of real-time RT-PCR analysis ↗Horticulture Research · 2021 · PMID 34333545not yet assessed
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An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids ↗The Plant Genome · 2021 · PMID 34109759not yet assessed
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High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry ↗Horticulture Research · 2021 · PMID 34333532not yet assessed
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Genotype, Environment, Year, and Harvest Effects on Fruit Quality Traits of Five Blueberry (Vaccinium corymbosum L.) Cultivars ↗Agronomy · 2021not yet assessed
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Genome sequence of <i>Monilinia vaccinii-corymbosi</i> sheds light on mummy berry disease infection of blueberry and mating type ↗G3 Genes Genomes Genetics · 2021 · PMID 33598705not yet assessed
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Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae) ↗BMC Genomics · 2021 · PMID 34182921not yet assessed
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Detection of Fruit Meals Within Laboratory-Raised and Field-Trapped Adult Drosophila suzukii (Diptera: Drosophilidae) Guts ↗Frontiers in Ecology and Evolution · 2021not yet assessed
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Additional file 1 of Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae) ↗Figshare · 2021not yet assessed
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A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding ↗G3 Genes Genomes Genetics · 2020 · PMID 32769135not yet assessed
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Development of new genomic resources and tools for molecular breeding in blackberry ↗Acta Horticulturae · 2020not yet assessed
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Biomass yields, cytogenetics, fertility, and compositional analyses of novel bioenergy grass hybrids (<i>Tripidium</i> spp.) ↗GCB Bioenergy · 2020not yet assessed
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Characterization and improvement of novel bioenergy grasses (Tripidium spp.) ↗NCSU Libraries Repository (North Carolina State University Libraries) · 2020not yet assessed
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3D point cloud data to quantitatively characterize size and shape of shrub crops ↗Horticulture Research · 2019 · PMID 30962936not yet assessed
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Simulated storage causes carbohydrate loss and rooting differences in two poinsettia cultivars ↗Canadian Journal of Plant Science · 2019not yet assessed
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Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection ↗The Plant Genome · 2018 · PMID 30951101not yet assessed
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Breeding Trait Priorities of the Blueberry Industry in the United States and Canada ↗HortScience · 2018not yet assessed
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Identification and Mapping of Late Blight Resistance Quantitative Trait Loci in Tomato Accession PI 163245 ↗The Plant Genome · 2018 · PMID 30512045not yet assessed
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Regions Underlying Population Structure and the Genomics of Organ Size Determination in <i>Capsicum annuum</i> ↗The Plant Genome · 2017 · PMID 29293816not yet assessed
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Disease Resistance to Multiple Fungal and Oomycete Pathogens Evaluated Using a Recombinant Inbred Line Population in Pepper ↗Phytopathology · 2017 · PMID 28762287not yet assessed
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Recent advance in carrot genomics ↗Acta Horticulturae · 2017not yet assessed
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引張特性と二相鋼の摩耗挙動に及ぼす熱処理スケジュールの影響【Powered by NICT】steel research international · 2017not yet assessed
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A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution ↗Nature Genetics · 2016 · PMID 27158781not yet assessed
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DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton ↗PLoS Genetics · 2016 · PMID 27168520not yet assessed
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A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding ↗Horticulture Research · 2016 · PMID 27602231not yet assessed
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New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL ↗Frontiers in Plant Science · 2016 · PMID 27486463not yet assessed
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Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton ↗PLoS Genetics · 2016 · PMID 27447832not yet assessed
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Evidence for introgression of AD<sub>2</sub> material into AD<sub>1</sub> and <i>vice versa</i>. ↗INDIGO (University of Illinois at Chicago) · 2016not yet assessed
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Evolutionary relationships between accessions based on the D<sub>T</sub>-genome. ↗Figshare · 2016not yet assessed
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The carrot genome provides insights into crop origins and a foundation for future crop improvementConicet · 2016not yet assessed
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Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of <i>Gossypium</i> spp. ↗G3 Genes Genomes Genetics · 2015 · PMID 25908569not yet assessed
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Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species ↗G3 Genes Genomes Genetics · 2015 · PMID 26355020not yet assessed
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BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (<i>Gossypium</i>) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping ↗G3 Genes Genomes Genetics · 2015 · PMID 25858960not yet assessed
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Characterization of early blight resistance in a recombinant inbred line population of tomato: II. Identification of QTLs and their co-localization with candidate resistance genes ↗Advanced Studies in Biology · 2015not yet assessed
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A Long‐Read Transcriptome Assembly of Cotton ( <i>Gossypium hirsutum</i> L.) and Intraspecific Single Nucleotide Polymorphism Discovery ↗The Plant Genome · 2015 · PMID 33228299not yet assessed
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Using Spinach to Compare Technologies for Whole Genome AssembliesPlant and Animal Genome XXIII Conference · 2015not yet assessed
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Characterization of early blight resistance in a recombinant inbred line population of tomato: I. Heritability and trait correlations ↗Advanced Studies in Biology · 2015not yet assessed
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Development of a 63K SNP Array for Gossypium and High-density Mapping of Intra- and Inter-specific Populations of Cotton (G. hirsutum L.)2015not yet assessed
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Eggplant and pepper orthologous loci affecting traits of agronomic importance2015not yet assessed
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Orthologous QTL for key breeding traits in eggplant and pepper2015not yet assessed
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New insights into Solanaceae synteny and identification of conserved loci controlling key agronomic traits in pepper and eggplant2015not yet assessed
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Synteny mapping of tomato, pepper and eggplant provides new insights on their chromosomal structural relationships2015not yet assessed
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Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species ↗Nature Genetics · 2014 · PMID 24441736not yet assessed
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<i>CaDMR1</i> Cosegregates with QTL <i>Pc5.1</i> for Resistance to <i>Phytophthora capsici</i> in Pepper ( <i>Capsicum annuum</i> ) ↗The Plant Genome · 2014not yet assessed
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Detached-Leaflet Evaluation of Tomato Germplasm for Late Blight Resistance and Its Correspondence to Field and Greenhouse Screenings ↗Plant Disease · 2014 · PMID 30699677not yet assessed
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Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts ↗BMC Genomics · 2014 · PMID 25359292not yet assessed
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Characterization of Capsicum annuum Genetic Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip ↗PLoS ONE · 2013 · PMID 23409153not yet assessed
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An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce ↗G3 Genes Genomes Genetics · 2013 · PMID 23550116not yet assessed
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Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencingG3 Genes Genomes Genetics · 2013 · PMID 23979935L1 91/100
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QTL Mapping of Fruit Rot Resistance to the Plant Pathogen <i>Phytophthora capsici</i> in a Recombinant Inbred Line <i>Capsicum annuum</i> Population ↗Phytopathology · 2013 · PMID 24168044not yet assessed
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Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres ↗Nature · 2012 · PMID 23257886not yet assessed
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<i>Uniform ripening</i> Encodes a <i>Golden 2-like</i> Transcription Factor Regulating Tomato Fruit Chloroplast Development ↗Science · 2012 · PMID 22745430not yet assessed
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De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes ↗BMC Genomics · 2012 · PMID 23110314not yet assessed
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Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific <i>Capsicum</i> RIL population ↗Genome · 2012 · PMID 23379339not yet assessed
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Selective genotyping to identify late blight resistance genes in an accession of the tomato wild species Solanum pimpinellifolium ↗Euphytica · 2012not yet assessed
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Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.) ↗BMC Genomics · 2012 · PMID 22583801not yet assessed
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Supplementary Material for Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development2012not yet assessed
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Repeated polyploidization of Gossypium genomes Nature 2012 Sup Mater2012not yet assessed
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Additional file 82012not yet assessed
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Additional file 92012not yet assessed
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De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity ↗BMC Genomics · 2011 · PMID 21810238not yet assessed
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Identification of novel quantitative trait loci for increased lycopene content and other fruit quality traits in a tomato recombinant inbred line population ↗Molecular Breeding · 2011not yet assessed
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A new genetic linkage map of tomato based on a<i>Solanum lycopersicum</i> ×<i>S. pimpinellifolium</i>RIL population displaying locations of candidate pathogen response genes ↗Genome · 2009 · PMID 19935918not yet assessed
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PUBLIC LIBRARIES AND POPULATION NEEDS OF IRAN2009not yet assessed
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The 42nd Tomato Breeders Roundtable June 28 - July 1, 2009 Embassy Suites River Promenade Sacramento, California2009not yet assessed
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Genetics, Genomics and Breeding of Late Blight and Early Blight Resistance in Tomato ↗Critical Reviews in Plant Sciences · 2008not yet assessed
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A<i>Solanum lycopersicum</i><mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mo>×</mml:mo></mml:math><i>Solanum pimpinellifolium</i>Linkage Map of Tomato Displaying Genomic Locations of R-Genes, RGAs, and Candidate Resistance/Defense-Response ESTs ↗International Journal of Plant Genomics · 2008 · PMID 19223983not yet assessed
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EVALUATION OF THERAPEUTIC EFFECTS OF INTERFERON BETA-LA ON RELAPSING REMITTING MULTIPLE SCLEROSIS2008not yet assessed
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TWO SEWING NEEDLES IN THE BRAIN: A CASE REPORTIranian journal of medical sciences · 2007not yet assessed
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GENETICS OF EARLY BLIGHT RESISTANCE IN TOMATO ↗Acta Horticulturae · 2005not yet assessed
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Genetics and Breeding of Early Blight Resistance in Tomato ↗HortScience · 2005not yet assessed
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(13) Comparative Mapping of Early Blight Resistance QTLs and Candidate Resistance Genes in F2, F3, F4 and a RIL Population of Tomato ↗HortScience · 2005not yet assessed
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MOLECULAR CHARACTERIZATION OF OLIVE GERMPLASM IN IRAN BY USE OF RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) AND CORRELATION WITH PHENOTYPIC STUDIES: PRELIMINARY RESULTS ↗Acta Horticulturae · 2003not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Ashrafi H” paper on PubMed ↗