Giacomo B. Marino

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (3)

• GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.⚑
  2025 L1 76/100 ⚑
• RummaGEO: Automatic mining of human and mouse gene sets from GEO.
  2024 L1 63/100
• D2H2: diabetes data and hypothesis hub.
  2023

3 assessed by us (1 reproduced) · 31 not yet assessed — every PubMed paper on record, linked below.

• The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs ↗

  Journal of Molecular Biology · 2026 · PMID 41506317
  not yet assessed
• GSFM source code snapshot from 03212026 ↗

  Figshare · 2026
  not yet assessed
• GSFM source code snapshot from 03212026 ↗

  Figshare · 2026
  not yet assessed
• GSFM: A gene set foundation model pre-trained on a massive collection of diverse gene sets ↗

  Patterns · 2026
  not yet assessed
• L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine ↗

  Nucleic Acids Research · 2025 · PMID 40308216
  not yet assessed
• Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures ↗

  Cancer Cell · 2025 · PMID 40749670
  not yet assessed
• Playbook workflow builder: Interactive construction of bioinformatics workflows ↗

  PLoS Computational Biology · 2025 · PMID 40179105
  not yet assessed
• GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets⚑

  GigaScience · 2025 · PMID 40208796
  L1 76/100 ⚑
• lncRNAlyzr: Enrichment Analysis for lncRNA Sets ↗

  Journal of Molecular Biology · 2025 · PMID 40133794
  not yet assessed
• The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Abstract 6290: sc2DAT: workflow for targeting tumor subpopulations of single cells ↗

  Cancer Research · 2025
  not yet assessed
• Abstract 1079: L2S2: Chemical perturbation and CRISPR KO LINCS L1000 signature search engine ↗

  Cancer Research · 2025
  not yet assessed
• A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 40501705
  not yet assessed
• Pan-cancer proteogenomics characterization of tumor immunity ↗

  Cell · 2024 · PMID 38359819
  not yet assessed
• Rummagene: massive mining of gene sets from supporting materials of biomedical research publications ↗

  Communications Biology · 2024 · PMID 38643247
  not yet assessed
• RummaGEO: Automatic mining of human and mouse gene sets from GEO

  Patterns · 2024 · PMID 39569206
  L1 63/100
• Multiomics2Targets identifies targets from cancer cohorts profiled with transcriptomics, proteomics, and phosphoproteomics ↗

  Cell Reports Methods · 2024 · PMID 39127042
  not yet assessed
• Regulatory elements in SEM1-DLX5-DLX6 (7q21.3) locus contribute to genetic control of coronal nonsyndromic craniosynostosis and bone density-related traits ↗

  Genetics in Medicine Open · 2024 · PMID 39345948
  not yet assessed
• RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38645198
  not yet assessed
• Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults ↗

  Cancer Research · 2024
  not yet assessed
• Abstract 7346: Optimizing pan-cancer driver pathway analysis from patient transcriptomics and phosphoproteomics ↗

  Cancer Research · 2024
  not yet assessed
• Abstract 4897: Personalized cell surface target identification from pan-cancer RNA-seq and proteomics profiling of tumors ↗

  Cancer Research · 2024
  not yet assessed
• Protocol for using Multiomics2Targets to identify targets and driver kinases for cancer cohorts profiled with multi-omics assays ↗

  STAR Protocols · 2024 · PMID 39565691
  not yet assessed
• sc2DAT: workflow for targeting tumor subpopulations of single cells ↗

  Bioinformatics Advances · 2024 · PMID 41079221
  not yet assessed
• Enrichr-KG: bridging enrichment analysis across multiple libraries ↗

  Nucleic Acids Research · 2023 · PMID 37166973
  not yet assessed
• Toxicology knowledge graph for structural birth defects ↗

  Communications Medicine · 2023 · PMID 37460679
  not yet assessed
• lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs ↗

  Database · 2023 · PMID 36869839
  not yet assessed
• GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery ↗

  Nucleic Acids Research · 2023 · PMID 37166966
  not yet assessed
• Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells ↗

  Aging Cell · 2023 · PMID 37082798
  not yet assessed
• D2H2: diabetes data and hypothesis hub

  Bioinformatics Advances · 2023 · PMID 38107655
• Rummagene: Mining Gene Sets from Supporting Materials of PMC Publications ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• ReproTox-KG: Toxicology Knowledge Graph for Structural Birth Defects ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Anatomy of the Human Osseous Spiral Lamina and Cochlear Partition Bridge: Relevance for Cochlear Partition Motion ↗

  Journal of the Association for Research in Otolaryngology · 2020 · PMID 32166603
  not yet assessed