Anthony Huffman

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.
  2023 L1 64/100

1 assessed by us (0 reproduced) · 40 not yet assessed — every PubMed paper on record, linked below.

• Immune biomarkers, profiles, and responses: a vaccine ontology perspective ↗

  Journal of Biomedical Semantics · 2026 · PMID 40777277
  not yet assessed
• VO: The Vaccine Ontology ↗

  Scientific Data · 2026 · PMID 40832256
  not yet assessed
• SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis ↗

  Scientific Data · 2026 · PMID 41535301
  not yet assessed
• Systematic collection, annotation, and pattern analysis of viral vaccines in the VIOLIN vaccine knowledgebase ↗

  Frontiers in Cellular and Infection Microbiology · 2025 · PMID 39991713
  not yet assessed
• Dietary cinnamon promotes longevity and extends healthspan via mTORC1 and autophagy signaling ↗

  Aging Cell · 2025 · PMID 39760475
  not yet assessed
• A fourfold pathogen reference ontology suite ↗

  Journal of Biomedical Semantics · 2025 · PMID 40313667
  not yet assessed
• Mondrian’s Neo-Plasticism, Troisgros’s Nouvelle Cuisine, and the Shifting Spirit of Modernism ↗

  Food Studies An Interdisciplinary Journal · 2025
  not yet assessed
• SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 40909744
  not yet assessed
• SEA-CDM Supplemental Figures ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• SEA-CDM Supplemental Figures ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• CanVaxKB: a web-based cancer vaccine knowledgebase ↗

  NAR Cancer · 2024 · PMID 38204924
  not yet assessed
• Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis ↗

  Journal of Biomedical Semantics · 2024 · PMID 38890666
  not yet assessed
• Ontological representation, modeling, and analysis of parasite vaccines ↗

  Journal of Biomedical Semantics · 2024 · PMID 38664818
  not yet assessed
• Bacterial whole-genome determination and applications ↗

  Elsevier eBooks · 2024
  not yet assessed
• Grounding Realizable Entities ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data

  Frontiers in Immunology · 2023 · PMID 37180100
  L1 64/100
• Ontology-based representation and analysis of conditional vaccine immune responses using Omics data. ↗

  PubMed · 2023 · PMID 39583065
  not yet assessed
• Vaxign-DL: A Deep Learning-based Method for Vaccine Design and its Evaluation ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 38076796
  not yet assessed
• Grounding Realizable Entities in Applied Ontologies ↗

  2023
  not yet assessed
• List of contributors ↗

  Elsevier eBooks · 2023
  not yet assessed
• CanVaxKB: A Web-based Cancer Vaccine Knowledgebase ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• CanVaxKB: A Web-based Cancer Vaccine Knowledgebase ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology ↗

  Journal of Biomedical Semantics · 2022 · PMID 36271389
  not yet assessed
• COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning ↗

  Briefings in Bioinformatics · 2022 · PMID 35649389
  not yet assessed
• A new framework for host-pathogen interaction research ↗

  Frontiers in Immunology · 2022 · PMID 36591248
  not yet assessed
• VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2022
  not yet assessed
• VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2022
  not yet assessed
• Additional file 4 of A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology ↗

  Open MIND · 2022
  not yet assessed
• Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning ↗

  Nucleic Acids Research · 2021 · PMID 34009334
  not yet assessed
• VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms ↗

  Frontiers in Immunology · 2021 · PMID 33777032
  not yet assessed
• Cov19VaxKB: A web-based integrative COVID-19 vaccine knowledge base ↗

  Vaccine X · 2021 · PMID 34981039
  not yet assessed
• CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature ↗

  Journal of Biomedical Semantics · 2021 · PMID 34454610
  not yet assessed
• COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning ↗

  Frontiers in Immunology · 2020 · PMID 32719684
  not yet assessed
• Complete Genome Sequences of Cluster G Mycobacteriophage Darionha, Cluster A Mycobacteriophage Salz, and Cluster J Mycobacteriophage ThreeRngTarjay ↗

  Microbiology Resource Announcements · 2020 · PMID 32409529
  not yet assessed
• CIDO: The community-based coronavirus infectious disease ontology

  PhilPapers (PhilPapers Foundation) · 2020
  not yet assessed
• CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis ↗

  Scientific Data · 2020 · PMID 32533075
  not yet assessed
• COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020 · PMID 32511333
  not yet assessed
• Ontology-based systematic classification and analysis of coronaviruses, hosts, and host-coronavirus interactions towards deep understanding of COVID-19 ↗

  arXiv (Cornell University) · 2020
  not yet assessed
• OGG-CoV: Ontology Representation and Analysis of Genes and Genomes of Coronaviruses (short paper).

  2020
  not yet assessed
• The Mapping of Drosophila melanogaster mutant A.4.4 ↗

  PubMed · 2018 · PMID 32550366
  not yet assessed
• Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih ↗

  Genome Announcements · 2017 · PMID 29074662
  not yet assessed