Justin A. Pachebat

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
  2019 L1 100/100

1 assessed by us (1 reproduced) · 55 not yet assessed — every PubMed paper on record, linked below.

• Investigating within-host population diversity of Cryptosporidium parvum using BlooMine ↗

  BMC Genomics · 2025 · PMID 41266973
  not yet assessed
• Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches ↗

  Microbiome · 2021 · PMID 34154659
  not yet assessed
• Correction to: Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches ↗

  Microbiome · 2021 · PMID 34376250
  not yet assessed
• Microbiomes attached to fresh perennial ryegrass- are temporally resilient and adapt to changing ecological niches ↗

  Research Square · 2021
  not yet assessed
• The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens ↗

  Frontiers in Microbiology · 2020 · PMID 32760371
  not yet assessed
• Generating Reliable Genome Assemblies of Intestinal Protozoans from Clinical Samples for the Purpose of Biomarker Discovery ↗

  Communications in computer and information science · 2020
  not yet assessed
• Microbiomes attached to fresh perennial ryegrass- are temporally resilient and adapt to changing ecological niches ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Microbiomes Attached to Fresh Perennial Ryegrass- are Temporally Resilient and Adapt to Changing Ecological Niches ↗

  Research Square · 2020
  not yet assessed
• Plant-attached microbiomes temporally transition into specialised ecological niches ↗

  Open MIND · 2020
  not yet assessed
• Evolutionary genomics of anthroponosis in Cryptosporidium ↗

  Nature Microbiology · 2019 · PMID 30833731
  not yet assessed
• Genomic analysis of bacteria in the Acute Oak Decline pathobiome

  Microbial Genomics · 2019 · PMID 30625111
  L1 100/100
• Domestication of Campylobacter jejuni NCTC 11168 ↗

  Microbial Genomics · 2019 · PMID 31310201
  not yet assessed
• Identifying and resolving genome misassembly issues important for biomarker discovery in the protozoan parasite, cryptosporidium ↗

  ORCA Online Research @Cardiff (Cardiff University) · 2019
  not yet assessed
• Domestication of <i>Campylobacter jejuni</i> NCTC 11168 ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Identifying and Resolving Genome Misassembly Issues Important for Biomarker Discovery in the Protozoan Parasite, Cryptosporidium ↗

  2019
  not yet assessed
• A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer ↗

  PLoS ONE · 2017 · PMID 28542458
  not yet assessed
• Metagenomic Sequencing of the Chronic Obstructive Pulmonary Disease Upper Bronchial Tract Microbiome Reveals Functional Changes Associated with Disease Severity ↗

  PLoS ONE · 2016 · PMID 26872143
  not yet assessed
• Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  BMC Genomics · 2016 · PMID 27189372
  not yet assessed
• Draft Genome Sequence of Probiotic Enterococcus faecium Strain L-3 ↗

  Genome Announcements · 2016 · PMID 26823581
  not yet assessed
• Terminator Operon Reporter: combining a transcription termination switch with reporter technology for improved gene synthesis and synthetic biology applications ↗

  Scientific Reports · 2016 · PMID 27220405
  not yet assessed
• Additional file 1: Table S1. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 6: Table S4. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 7: Table S5. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 3: Table S3. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: Table S2. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 8: Table S6. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 4: Figures S1-S2. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 4: Figures S1-S2. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 8: Table S6. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 5: Figure S3. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Additional file 5: Figure S3. of Seasonal immunoregulation in a naturally-occurring vertebrate ↗

  Figshare · 2016
  not yet assessed
• Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass ↗

  FEMS Microbiology Ecology · 2015 · PMID 26542074
  not yet assessed
• Neurofibromin controls macropinocytosis and phagocytosis in Dictyostelium ↗

  eLife · 2015 · PMID 25815683
  not yet assessed
• Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples ↗

  BMC Genomics · 2015 · PMID 26318339
  not yet assessed
• C₄ Photosynthesis in the Rice Paddy: Insights from the Noxious Weed <i>Echinochloa glabrescens</i> ↗

  PLANT PHYSIOLOGY · 2015 · PMID 26527656
  not yet assessed
• Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from<i>Frankliniella occidentalis</i> ↗

  Genome Biology and Evolution · 2015 · PMID 26185096
  not yet assessed
• RapGene: a fast and accurate strategy for synthetic gene assembly in Escherichia coli ↗

  Scientific Reports · 2015 · PMID 26062748
  not yet assessed
• Author response: Neurofibromin controls macropinocytosis and phagocytosis in Dictyostelium ↗

  2015
  not yet assessed
• Coupled cryoconite ecosystem structure-function relationships are revealed by comparing bacterial communities in alpine and Arctic glaciers ↗

  FEMS Microbiology Ecology · 2014 · PMID 24433483
  not yet assessed
• The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of <i>Enterobacteriaceae</i> associated with acute oak decline ↗

  Journal of Applied Microbiology · 2014 · PMID 25355271
  not yet assessed
• The dynamic bacterial communities of a melting High Arctic glacier snowpack ↗

  The ISME Journal · 2013 · PMID 23552623
  not yet assessed
• A metagenomic snapshot of taxonomic and functional diversity in an alpine glacier cryoconite ecosystem ↗

  Environmental Research Letters · 2013
  not yet assessed
• Draft Genome Sequence of Rhodococcus rhodnii Strain LMG5362, a Symbiont of <i>Rhodnius prolixus</i> (Hemiptera, Reduviidae, Triatominae), the Principle Vector of Trypanosoma cruzi ↗

  Genome Announcements · 2013 · PMID 23788540
  not yet assessed
• Balancing selection and the maintenance of MHC supertype variation in a selfing vertebrate ↗

  Proceedings of the Royal Society B Biological Sciences · 2013 · PMID 23303550
  not yet assessed
• Radiometric measurement of primary (PP) and secondary production (SP) in Rotmoosferner cryoconites sampled for metagenome sequencing on 14 September 2010 ↗

  Figshare · 2013
  not yet assessed
• A comparison of the microbiome and the metabolome of different regions of the equine hindgut ↗

  FEMS Microbiology Ecology · 2012 · PMID 22757649
  not yet assessed
• Maintaining functional major histocompatibility complex diversity under inbreeding: the case of a selfing vertebrate ↗

  Proceedings of the Royal Society B Biological Sciences · 2012 · PMID 23075838
  not yet assessed
• Comparison of bacterial populations from the caecum, right dorsal colon and faeces of horses’ using terminal restriction fragment length polymorphism (TRFLP) ↗

  Journal of Equine Veterinary Science · 2011
  not yet assessed
• Update on ordering of pea aphid scaffolds by HAPPY mapping

  Rothamsted Repository (Rothamsted Repository) · 2009
  not yet assessed
• Extensive proteolytic processing of the malaria parasite merozoite surface protein 7 during biosynthesis and parasite release from erythrocytes ↗

  Molecular and Biochemical Parasitology · 2006 · PMID 17097159
  not yet assessed
• The genome of the social amoeba Dictyostelium discoideum ↗

  Nature · 2005 · PMID 15875012
  not yet assessed
• Sequence and analysis of chromosome 2 of Dictyostelium discoideum ↗

  Nature · 2002 · PMID 12097910
  not yet assessed
• Merozoite surface protein-7 : a novel protein on the surface of Plasmodium falciparum merozoites.

  UCL Discovery (University College London) · 2002
  not yet assessed
• The 22 kDa component of the protein complex on the surface of Plasmodium falciparum merozoites is derived from a larger precursor, merozoite surface protein 7 ↗

  Molecular and Biochemical Parasitology · 2001 · PMID 11551634
  not yet assessed
• Characterization of N-myristoyltransferase from Plasmodium falciparum ↗

  Biochemical Journal · 2000 · PMID 10816442
  not yet assessed
• Characterization of N-myristoyltransferase from Plasmodium falciparum ↗

  Biochemical Journal · 2000
  not yet assessed