Peter Orchard
Reproducibility track record
1
assessed papers
—
mean reproducibility
0
reproduced (C1–C2)
0
flagged
18
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
Funders
—
Frequent co-authors
Heming Yao 1Alan P. Boyle 1Maureen A. Sartor 1Tingting Qin 1Raymond G. Cavalcante 1Shuze Wang 1Shiting Li 1Snehal Patil 1Hanrui Zhang 1Christopher H. T. Lee 1
Institutions
University of Michigan 1
Geography (author institutions)
US 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
Complete publication record (101)
Request a reproduction →1 assessed by us (0 reproduced) · 100 not yet assessed — every PubMed paper on record, linked below.
-
Cross-cohort analysis of expression and splicing quantitative trait loci in TOPMed ↗Science · 2026 · PMID 40034763not yet assessed
-
Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participants ↗Genome biology · 2026 · PMID 41535900not yet assessed
-
Whole Blood Transcriptomic Analysis of Sickle Cell Trait ↗European Journal Of Haematology · 2026 · PMID 41528117not yet assessed
-
Credible sets from "Cross-cohort analysis of expression and splicing quantitative trait loci in TOPMed" ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
-
Donor-matched iPSC model reveals context-dependent T2D genetic signals in fibro-adipogenic progenitors ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 41676558not yet assessed
-
3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 41959395not yet assessed
-
Genetic demultiplexing and transcript start site identification from nanopore sequencing of 10x Genomics multiome libraries ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 41959511not yet assessed
-
Integrated Analysis of Skeletal Muscle Transcriptional Networks in Type 2 Diabetes ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
-
Integrated Analysis of Skeletal Muscle Transcriptional Networks in Type 2 Diabetes ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
-
Erosion of regenerative regulation: age-associated shifts in the skeletal muscle fiber epigenome and transcriptome ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
-
Publisher Correction: Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participants ↗Genome biology · 2026 · PMID 42265570not yet assessed
-
Unveiling the Hidden Rules: Enhancing NMD Prediction for Protein-Truncating Variants ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42427729not yet assessed
-
Higher-order genome architecture of spermatids guides chromatin assembly in mature sperm ↗Research Square · 2026 · PMID 42539040not yet assessed
-
Integrated Analysis of Skeletal Muscle Transcriptional Networks Characterizes Dysregulation in Pathways and Trait-Associated Regulatory Regions in Type 2 Diabetes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
-
Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood ↗The American Journal of Human Genetics · 2025 · PMID 39809269not yet assessed
-
Extensive differential gene expression and regulation by sex in human skeletal muscle ↗Cell Genomics · 2025 · PMID 40480217not yet assessed
-
Integrative single-cell multi-omics profiling of human pancreatic islets identifies T1D-associated genes and regulatory signals ↗Cell Reports · 2025 · PMID 40737125not yet assessed
-
Integrating whole genome and transcriptome sequencing to characterize the genetic architecture of isoform variation ↗Nature Communications · 2025 · PMID 41274869not yet assessed
-
CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations ↗Nucleic Acids Research · 2025 · PMID 41335468not yet assessed
-
Genetic integration with cell-specific nucleosome positioning resolves causal relationships underlying chromatin accessibility profiles ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41279487not yet assessed
-
not yet assessed
-
Skeletal muscle enhancer programming of cardiorespiratory fitness ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41256396not yet assessed
-
Beyond eQTLs: Insights into Transcriptomic Variation through Allele-Specific Expression Analysis ↗SSRN Electronic Journal · 2025not yet assessed
-
Inverse directions of association of higher physical activity and higher insulin resistance with human skeletal muscle cell typae abundance and fiber-type-level gene expression ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41279274not yet assessed
-
Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2025not yet assessed
-
Extensive differential gene expression and regulation by sex in human skeletal muscle ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2025not yet assessed
-
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2025not yet assessed
-
Integrating whole genome and transcriptome sequencing to characterize the genetic architecture of isoform variation ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2025not yet assessed
-
Skeletal muscle enhancer programming of cardiorespiratory fitness ↗Zenodo (CERN European Organization for Nuclear Research) · 2025not yet assessed
-
2013-LB: Population-Scale Skeletal Muscle Single-Nucleus Multiomic Profiling Reveals Extensive Context-Specific Genetic Regulation ↗Diabetes · 2024not yet assessed
-
Evidence for compensatory evolution within pleiotropic regulatory elements ↗Genome Research · 2024 · PMID 39255977not yet assessed
-
Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood ↗medRxiv · 2024 · PMID 38699360not yet assessed
-
Evidence for compensatory evolution within pleiotropic regulatory elements ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
-
Integrating Whole Genome and Transcriptome Sequencing to Characterize the Genetic Architecture of Isoform Variation and its Implications for Health and Disease ↗medRxiv · 2024 · PMID 39677465not yet assessed
-
not yet assessed
-
2012-LB: Type 2 Diabetes GWAS Signal C2CD4A/B Insulin Resistance Mechanisms in Skeletal Muscle ↗Diabetes · 2024not yet assessed
-
1998-LB: Previously Frozen Beta-Cell Transcriptional Response to Cytokine Treatment Mirrors That of Fresh Beta Cells ↗Diabetes · 2024not yet assessed
-
2000-LB: Multiome Profiling of Human Islets Nominates Beta-Cell–Specific Cytokine Response Profiles Underlying Type 1 Diabetes ↗Diabetes · 2024not yet assessed
-
not yet assessed
-
not yet assessed
-
213-OR: Widespread Age-Associated Changes in the Chromatin Architecture of Skeletal Muscle Cell Types ↗Diabetes · 2024not yet assessed
-
not yet assessed
-
Whole Genome Sequence Analysis of Pulmonary Function and COPD in 44,287 Multi-ancestry Participants ↗Research Square · 2024not yet assessed
-
CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
-
Genetic risk converges on regulatory networks mediating early type 2 diabetes ↗Nature · 2023 · PMID 38049589not yet assessed
-
FixItFelix: improving genomic analysis by fixing reference errors ↗Genome biology · 2023 · PMID 36810122not yet assessed
-
Population-scale skeletal muscle single-nucleus multi-omic profiling reveals extensive context specific genetic regulation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 38168419not yet assessed
-
An integrative single-cell multi-omics profiling of human pancreatic islets identifies T1D associated genes and regulatory signals ↗Research Square · 2023 · PMID 37886586not yet assessed
-
Additional file 2 of FixItFelix: improving genomic analysis by fixing reference errors ↗Figshare · 2023not yet assessed
-
Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory dataGenome biology · 2022 · PMID 35473573
-
Fixing reference errors efficiently improves sequencing results ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
Single-cell gene expression and chromatin accessibility profiling of human pancreatic islets at basal and stimulatory conditions nominates mechanisms of type 1 diabetes genetic risk ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
Additional file 2 of Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data ↗Figshare · 2022not yet assessed
-
Genetic effects on liver chromatin accessibility identify disease regulatory variants ↗The American Journal of Human Genetics · 2021 · PMID 34038741not yet assessed
-
Chromatin information content landscapes inform transcription factor and DNA interactions ↗Nature Communications · 2021 · PMID 33637709not yet assessed
-
A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures ↗Diabetes · 2021 · PMID 33849996not yet assessed
-
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits ↗Genome Research · 2021 · PMID 34815310not yet assessed
-
RFX6-mediated dysregulation defines human β cell dysfunction in early type 2 diabetes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures ↗2021not yet assessed
-
A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures ↗2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D ↗Nature Communications · 2020 · PMID 32999275not yet assessed
-
Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv ↗Cell Systems · 2020 · PMID 32213349not yet assessed
-
BAF60a deficiency uncouples chromatin accessibility and cold sensitivity from white fat browning ↗Nature Communications · 2020 · PMID 32404872not yet assessed
-
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Epigenomic and Transcriptomic Profiling for the Study of Monogenic and Polygenic Traits and DiseaseDeep Blue (University of Michigan) · 2020not yet assessed
-
Genetic regulatory signatures underlying islet gene expression and type 2 diabetes ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2020not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Processed data from "Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits" ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function ↗Cell Reports · 2019 · PMID 30650367not yet assessed
-
Influence of genetic variants on gene expression in human pancreatic islets – implications for type 2 diabetes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Chromatin information content landscapes inform transcription factor and DNA interactions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
A transcription start site map in human pancreatic islets reveals functional regulatory signatures ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Processed data from "Chromatin information content landscapes inform transcription factor and DNA interactions" ↗Figshare · 2019not yet assessed
-
Processed data from "Chromatin information content landscapes inform transcription factor and DNA interactions" ↗Zenodo (CERN European Organization for Nuclear Research) · 2019not yet assessed
-
Summary statistics for the InsPIRE consortium (pancreatic islets eQTLs) ↗Discovery Research Portal (University of Dundee) · 2019not yet assessed
-
Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression ↗Genetics · 2018 · PMID 30593493not yet assessed
-
Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice ↗Human Molecular Genetics · 2018 · PMID 30380057not yet assessed
-
Genome-wide chromatin accessibility and transcriptome profiling show minimal epigenome changes and coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
EndoC-βH1 multi-genomic profiling defines gene regulatory programs governing human pancreatic β cell identity and function ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Report to Edify Energy on the proposed solar voltaic farm at Darlington Point: Effects of solar voltaic farm installation and operation on Riverine Plain GrasslandsCharles Sturt University Research Output (CRO) · 2018not yet assessed
-
Genetic regulatory signatures underlying islet gene expression and type 2 diabetes ↗Proceedings of the National Academy of Sciences · 2017 · PMID 28193859not yet assessed
-
Anatomy of the bacitracin resistance network in B acillus subtilis ↗Molecular Microbiology · 2016 · PMID 26815905not yet assessed
-
Exiled in the Bush ↗2016not yet assessed
-
Young people and substance use problemsSwinburne figshare (Swinburne University of Technology) · 2007not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Orchard P” paper on PubMed ↗