Stephan Grein

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using R.
  2026 L1 100/100

1 assessed by us (1 reproduced) · 46 not yet assessed — every PubMed paper on record, linked below.

• Endothelial ADGRF5(GPR116) governs vascular adaptation required for sustained thermogenic remodeling of brown adipose tissue ↗

  Molecular Metabolism · 2026 · PMID 41796902
  not yet assessed
• ICB-DCM/pyABC: pyABC v0.12.17 ↗

  Open MIND · 2026
  not yet assessed
• pyPESTO - Parameter EStimation TOolbox for python ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• From brown to white: Brown adipose tissue endothelial cells whiten in culture conditions ↗

  Molecular Metabolism · 2026 · PMID 41831567
  not yet assessed
• pyPESTO - Parameter EStimation TOolbox for python ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• SBMLImporter.jl ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences: supplementary code and data ↗

  Open MIND · 2026
  not yet assessed
• Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences: supplementary code and data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• SBMLImporter.jl ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• SBMLImporter.jl ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Kupffer cell programming by maternal obesity triggers fatty liver disease ↗

  Nature · 2025 · PMID 40533564
  not yet assessed
• PEtab.jl: advancing the efficiency and utility of dynamic modelling ↗

  Bioinformatics · 2025 · PMID 40924544
  not yet assessed
• Calopy — an advanced framework for the integration and analysis of indirect calorimetry data ↗

  Nature Metabolism · 2025 · PMID 40562969
  not yet assessed
• Shiny-Calorie: A context-aware application for indirect calorimetry data analysis and visualization using R ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• PEtab.jl: Advancing the Efficiency and Utility of Dynamic Modelling ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• From Brown to White: Brown Adipose Tissue Endothelial Cells whiten in Culture Conditions ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using R

  Bioinformatics Advances · 2025 · PMID 41640623
  L1 100/100
• Endothelial deletion of ADGRF5 (GPR116) promotes fibro-inflammatory EndMT and impairs adaptive thermogenesis in brown adipose tissue ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• pyPESTO - Parameter EStimation TOolbox for python ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• pyPESTO - Parameter EStimation TOolbox for python ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data ↗

  Bioinformatics · 2024
  not yet assessed
• From Planning Stage Towards FAIR Data: A Practical Metadatasheet For Biomedical Scientists ↗

  Scientific Data · 2024 · PMID 38778016
  not yet assessed
• From Planning Stage To FAIR Data: A Practical Metadatasheet For Biomedical Scientists ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• cOmicsArt – a customizable Omics Analysis and reporting tool ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• cOmicsArt—a customizable Omics Analysis and reporting tool ↗

  Bioinformatics Advances · 2024 · PMID 40385593
  not yet assessed
• pyPESTO: a modular and scalable tool for parameter estimation for dynamic models ↗

  Bioinformatics · 2023 · PMID 37995297
  not yet assessed
• Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks ↗

  PLoS Computational Biology · 2023 · PMID 36595539
  not yet assessed
• IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line ↗

  Bioinformatics · 2023 · PMID 36943334
  not yet assessed
• Developmental programming of Kupffer cells by maternal obesity causes fatty liver disease in the offspring ↗

  Research Square · 2023
  not yet assessed
• pyPESTO: A modular and scalable tool for parameter estimation for dynamic models ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• IntestLine: a Shiny-based application to map the rolled intestinal tissue onto a line ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Iron-Bound Lipocalin-2 from Tumor-Associated Macrophages Drives Breast Cancer Progression Independent of Ferroportin ↗

  Metabolites · 2021 · PMID 33808732
  not yet assessed
• Macrophage-Derived Iron-Bound Lipocalin-2 Correlates with Renal Recovery Markers Following Sepsis-Induced Kidney Damage ↗

  International Journal of Molecular Sciences · 2020 · PMID 33065981
  not yet assessed
• Modeling Drug Absorption from the Dermis after an Injection ↗

  Journal of Pharmaceutical Sciences · 2020 · PMID 33248056
  not yet assessed
• Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis ↗

  Frontiers in Computational Neuroscience · 2020 · PMID 32676020
  not yet assessed
• A novel mesh generator for the numerical simulation of multi-scale physics in neurons

  TUScholarShare (Temple University) · 2020
  not yet assessed
• Macrophage-derived lipocalin-2 transports iron in the tumor microenvironment ↗

  OncoImmunology · 2017 · PMID 29399416
  not yet assessed
• Tumour stroma‐derived lipocalin‐2 promotes breast cancer metastasis ↗

  The Journal of Pathology · 2016 · PMID 27038000
  not yet assessed
• Anatomically Detailed and Large-Scale Simulations Studying Synapse Loss and Synchrony Using NeuroBox ↗

  Frontiers in Neuroanatomy · 2016 · PMID 26903818
  not yet assessed
• 1D-3D hybrid modeling—from multi-compartment models to full resolution models in space and time ↗

  Frontiers in Neuroinformatics · 2014 · PMID 25120463
  not yet assessed
• Long-term potentiation through calcium-mediated N-Cadherin interaction is tightly controlled by the three-dimensional architecture of the synapse ↗

  BMC Neuroscience · 2013
  not yet assessed
• Employing NeuGen 2.0 to automatically generate realistic mor- phologies of hippocampal neurons and neural networks in 3D ↗

  Frontiers in Neuroinformatics · 2013
  not yet assessed
• 1D-3D Hybrid Modelling: From Multi-Compartment Models to Full Resolution Models in Space and Time ↗

  Frontiers in Neuroinformatics · 2013
  not yet assessed
• Employing NeuGen 2.0 to Automatically Generate Realistic Morphologies of Hippocampal Neurons and Neural Networks in 3D ↗

  Neuroinformatics · 2012 · PMID 23111491
  not yet assessed