John Chilton

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
  2023 L1 No computation

1 assessed by us (0 reproduced) · 52 not yet assessed — every PubMed paper on record, linked below.

• Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A <i>Candidozyma auris</i> Case Study ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41509213
  not yet assessed
• The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update ↗

  Nucleic Acids Research · 2024 · PMID 38769056
  not yet assessed
• The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

  Genome Research · 2023 · PMID 36828587
  L1 No computation
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update ↗

  Nucleic Acids Research · 2022 · PMID 35446428
  not yet assessed
• Methods included ↗

  Communications of the ACM · 2022
  not yet assessed
• Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space ↗

  Cell Genomics · 2022 · PMID 35199087
  not yet assessed
• Planemo: a command-line toolkit for developing, deploying, and executing scientific data analyses ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• common-workflow-language/cwltool: 3.1.20221109155812 ↗

  Edinburgh Research Explorer (University of Edinburgh) · 2022
  not yet assessed
• Addressing the demand for secure and scalable on-demand Galaxy platforms ↗

  Faculty of 1000 Research Ltd · 2021
  not yet assessed
• Interactive tools on Kubernetes ↗

  Faculty of 1000 Research Ltd · 2021
  not yet assessed
• A community effort to create standards for evaluating tumor subclonal reconstruction ↗

  Nature Biotechnology · 2020 · PMID 31919445
  not yet assessed
• No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics ↗

  PLoS Pathogens · 2020 · PMID 32790776
  not yet assessed
• Galaxy External Display Applications: closing a dataflow interoperability loop ↗

  Nature Methods · 2020 · PMID 31959996
  not yet assessed
• Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges ↗

  Genome biology · 2019 · PMID 31506093
  not yet assessed
• Galaxy External Display Applications: Closing a dataflow interoperability loop ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update ↗

  Nucleic Acids Research · 2018 · PMID 29790989
  not yet assessed
• Community-Driven Data Analysis Training for Biology ↗

  Cell Systems · 2018 · PMID 29953864
  not yet assessed
• Practical Computational Reproducibility in the Life Sciences ↗

  Cell Systems · 2018 · PMID 29953862
  not yet assessed
• Creating Standards for Evaluating Tumour Subclonal Reconstruction ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Galaxy tool shed: tool discovery and repository management ↗

  Faculty of 1000 Research Ltd · 2018
  not yet assessed
• Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers ↗

  PLoS Computational Biology · 2017 · PMID 28542180
  not yet assessed
• Community-driven data analysis training for biology ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Practical computational reproducibility in the life sciences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• The backbone of research reproducibility - sustainable and flexible tool deployment ↗

  Faculty of 1000 Research Ltd · 2017
  not yet assessed
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update ↗

  Nucleic Acids Research · 2016 · PMID 27137889
  not yet assessed
• Common Workflow Language, draft 3 ↗

  eScholarship (California Digital Library) · 2016
  not yet assessed
• A guide and best practices for R/Bioconductor tool integration in Galaxy ↗

  F1000Research · 2016
  not yet assessed
• Enhancing pre-defined workflows with <i>ad hoc</i> analytics using Galaxy, Docker and Jupyter ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• Common Workflow Language, v1.0 ↗

  Figshare · 2016
  not yet assessed
• Planemo – a scientific workflow SDK ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• Galaxy Architecture ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• Planemo: a scientific workflow SDK ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• NCBI BLAST+ integrated into Galaxy ↗

  GigaScience · 2015 · PMID 26336600
  not yet assessed
• Multi-omic data analysis using Galaxy ↗

  Nature Biotechnology · 2015 · PMID 25658277
  not yet assessed
• Enabling cloud bursting for life sciences within Galaxy ↗

  Concurrency and Computation Practice and Experience · 2015
  not yet assessed
• NCBI BLAST + integrated into Galaxy ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2015
  not yet assessed
• Increasing the Utility of Galaxy Workflows ↗

  Faculty of 1000 Research Ltd · 2015
  not yet assessed
• Portable workflow and tool descriptions with the CWL

  Research Explorer (The University of Manchester) · 2015
  not yet assessed
• Community-driven development for computational biology at Sprints, Hackathons and Codefests ↗

  BMC Bioinformatics · 2014 · PMID 25472764
  not yet assessed
• Implementation of Cloud based Next Generation Sequencing data analysis in a clinical laboratory ↗

  BMC Research Notes · 2014 · PMID 24885806
  not yet assessed
• Galaxy Cluster to Cloud - Genomics at Scale ↗

  2014
  not yet assessed
• Using i<scp>RT</scp>, a normalized retention time for more targeted measurement of peptides ↗

  PROTEOMICS · 2012 · PMID 22577012
  not yet assessed
• Workflow for analysis of high mass accuracy salivary data set using <scp>M</scp>ax<scp>Q</scp>uant and <scp>P</scp>rotein<scp>P</scp>ilot search algorithm ↗

  PROTEOMICS · 2012 · PMID 22623410
  not yet assessed
• Sensors and Smartphones: Tracking Water Collection in Rural Ethiopia ↗

  IEEE Pervasive Computing · 2012
  not yet assessed
• CLIA-certified next-generation sequencing analysis in the cloud ↗

  BMC Proceedings · 2012
  not yet assessed
• LTQ‐iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments ↗

  PROTEOMICS · 2010 · PMID 20821806
  not yet assessed
• Does IC design have a future in the clouds? ↗

  2010
  not yet assessed
• FLAT GRIDS DESIGNS EMPLOYING THE SWIVEL DIAPHRAGM ↗

  WORLD SCIENTIFIC eBooks · 2009
  not yet assessed
• Using the AIBOs in a CS1 course

  2007
  not yet assessed
• Transformable and transportable architecture with scissor structures

  Nottingham Trent University's Institutional Repository (Nottingham Trent Repository) · 2006
  not yet assessed
• IP REUSE QUALITY: Intellectual Property or Intense Pain? ↗

  International Symposium on Quality Electronic Design · 2002
  not yet assessed
• IP reuse in the system on a chip era ↗

  2000
  not yet assessed
• Spectrophotometric studies of solutions at elevated temperatures and pressures: status and program for FY1961 and part of FY 1962 ↗

  1960
  not yet assessed