Leszek P. Pryszcz

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (2)

• MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
  2020 L1 50/100
• The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.
  2015 56/100

2 assessed by us (0 reproduced) · 57 not yet assessed — every PubMed paper on record, linked below.

• AMaNITA: an end-to-end workflow for native tRNA nanopore sequencing data analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• De novo basecalling of RNA modifications at single molecule and nucleotide resolution ↗

  Genome biology · 2025 · PMID 40001217
  not yet assessed
• The RMaP challenge of predicting RNA modifications by nanopore sequencing ↗

  Communications Chemistry · 2025 · PMID 40221591
  not yet assessed
• Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution ↗

  Nature Protocols · 2025 · PMID 40628982
  not yet assessed
• Rapid and accurate demultiplexing of direct RNA nanopore sequencing data with SeqTagger ↗

  Genome Research · 2025 · PMID 39880590
  not yet assessed
• Enhanced detection of RNA modifications and read mapping with high-accuracy nanopore RNA basecalling models ↗

  Genome Research · 2024 · PMID 39271295
  not yet assessed
• SeqTagger, a rapid and accurate tool to demultiplex direct RNA nanopore sequencing datasets ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Nano3P-seq: charting the coding and non-coding transcriptome at single molecule resolution ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Predicting RNA modifications by nanopore sequencing: The RMaP challenge ↗

  Research Square · 2024
  not yet assessed
• Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing ↗

  Nature Biotechnology · 2023 · PMID 37024678
  not yet assessed
• <i>De novo</i> basecalling of m ⁶ A modifications at single molecule and single nucleotide resolution ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Enhanced detection of RNA modifications and mappability with high-accuracy nanopore RNA basecalling models ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Adar-mediated A-to-I editing is required for embryonic patterning and innate immune response regulation in zebrafish ↗

  Nature Communications · 2022 · PMID 36127363
  not yet assessed
• Genome analysis of five recently described species of the CUG-Ser clade uncovers<i>Candida theae</i>as a new hybrid lineage with pathogenic potential in the<i>Candida parapsilosis</i>species complex ↗

  DNA Research · 2022 · PMID 35438177
  not yet assessed
• Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing ↗

  Nature Biotechnology · 2021 · PMID 33986546
  not yet assessed
• Ten Years of Collaborative Progress in the Quest for Orthologs ↗

  Molecular Biology and Evolution · 2021 · PMID 33822172
  not yet assessed
• Genome analysis of <i>Candida subhashii</i> reveals its hybrid nature and dual mitochondrial genome conformations ↗

  DNA Research · 2021 · PMID 34129020
  not yet assessed
• ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data ↗

  Bioinformatics · 2021 · PMID 34293115
  not yet assessed
• Epigenetic Response of Yarrowia lipolytica to Stress: Tracking Methylation Level and Search for Methylation Patterns via Whole-Genome Sequencing ↗

  Microorganisms · 2021 · PMID 34576693
  not yet assessed
• ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets

  Frontiers in Genetics · 2020 · PMID 32256520
  L1 50/100
• MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life ↗

  Nucleic Acids Research · 2020 · PMID 32343307
  not yet assessed
• Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination ↗

  Plant Reproduction · 2019 · PMID 30719568
  not yet assessed
• Genome Sequence of the Yeast <i>Saprochaete ingens</i> CBS 517.90 ↗

  Microbiology Resource Announcements · 2019 · PMID 31831616
  not yet assessed
• Interplay of Chimeric Mating-Type Loci Impairs Fertility Rescue and Accounts for Intra-Strain Variability in Zygosaccharomyces rouxii Interspecies Hybrid ATCC42981 ↗

  Frontiers in Genetics · 2019 · PMID 30881382
  not yet assessed
• Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571 ↗

  Microbiology Resource Announcements · 2019 · PMID 30834381
  not yet assessed
• Transcriptome analyses of cells carrying the Type II Csp231I restriction–modification system reveal cross-talk between two unrelated transcription factors: C protein and the Rac prophage repressor ↗

  Nucleic Acids Research · 2019 · PMID 31372643
  not yet assessed
• Annotations of sapSuaA1 genome assembly ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2019
  not yet assessed
• Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Annotations of sapSuaA1 genome assembly ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2019
  not yet assessed
• Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal-to-zygotic transition ↗

  Development · 2018 · PMID 29229769
  not yet assessed
• nextPARS: parallel probing of RNA structures in Illumina ↗

  RNA · 2018 · PMID 29358234
  not yet assessed
• Transcriptome Analyses of Mosaic (MSC) Mitochondrial Mutants of Cucumber in a Highly Inbred Nuclear Background ↗

  G3 Genes Genomes Genetics · 2018 · PMID 29330162
  not yet assessed
• Draft Genome Sequences of the Highly Halotolerant Strain Zygosaccharomyces rouxii ATCC 42981 and the Novel Allodiploid Strain Zygosaccharomyces sapae ATB301 ^T Obtained Using the MinION Platform ↗

  Microbiology Resource Announcements · 2018 · PMID 30533882
  not yet assessed
• Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast ↗

  Molecular Biology of the Cell · 2017 · PMID 28904204
  not yet assessed
• Eukaryotic transporters for hydroxyderivatives of benzoic acid ↗

  Scientific Reports · 2017 · PMID 28827635
  not yet assessed
• Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• nextPARS: Parallel probing of RNA structures in Illumina ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Allodiploid Zygosaccharomyces genomes sequencing assists in deciphering the genetic basis of hybrid sterility

  IRIS UNIMORE (University of Modena and Reggio Emilia) · 2017
  not yet assessed
• Redundans: an assembly pipeline for highly heterozygous genomes ↗

  Nucleic Acids Research · 2016 · PMID 27131372
  not yet assessed
• Standardized benchmarking in the quest for orthologs ↗

  Nature Methods · 2016 · PMID 27043882
  not yet assessed
• Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in <i>Candida parapsilosis</i> ↗

  G3 Genes Genomes Genetics · 2016 · PMID 27707801
  not yet assessed
• Correction: The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis ↗

  PLoS Genetics · 2016 · PMID 27415787
  not yet assessed
• The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

  PLoS Genetics · 2015 · PMID 26517373
  56/100
• Interactions between Closely Related Bacterial Strains Are Revealed by Deep Transcriptome Sequencing ↗

  Applied and Environmental Microbiology · 2015 · PMID 26431969
  not yet assessed
• Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans ↗

  FEMS Yeast Research · 2015 · PMID 25743787
  not yet assessed
• Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies ↗

  Genome Biology and Evolution · 2014 · PMID 24747362
  not yet assessed
• Comparative genomics to unravel virulence mechanisms in fungal human pathogens

  LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) · 2014
  not yet assessed
• PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome ↗

  Nucleic Acids Research · 2013 · PMID 24275491
  not yet assessed
• Ancient Dispersal of the Human Fungal Pathogen Cryptococcus gattii from the Amazon Rainforest ↗

  PLoS ONE · 2013 · PMID 23940707
  not yet assessed
• Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis ↗

  Genome Biology and Evolution · 2013 · PMID 24259314
  not yet assessed
• PTP-central: A comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes ↗

  Methods · 2013 · PMID 23911837
  not yet assessed
• RNA-seq reveals differentially expressed genes in cucumber MSC lines possessing mitochondrial DNA rearrangements

  Biotechnologia · 2013
  not yet assessed
• Mitochondrial genome variability within the Candida parapsilosis species complex ↗

  Mitochondrion · 2012 · PMID 22824459
  not yet assessed
• PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions ↗

  Nucleic Acids Research · 2010 · PMID 21075798
  not yet assessed
• MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score ↗

  Nucleic Acids Research · 2010 · PMID 21149260
  not yet assessed
• Redundans: an assembly pipeline for highly heterozygous genomes

  RECERCAT (Consorci de Serveis Universitaris de Catalunya) ·
  not yet assessed