Kasper D. Hansen
Reproducibility track record
1
assessed papers
88/100
mean reproducibility
1
reproduced (C1–C2)
0
flagged
23
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
Funders
—
Frequent co-authors
Institutions
Oregon Health & Science University 1VA Portland Health Care System 1Johns Hopkins University 1Johns Hopkins Medicine 1
Geography (author institutions)
US 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
Complete publication record (321)
Request a reproduction →1 assessed by us (1 reproduced) · 320 not yet assessed — every PubMed paper on record, linked below.
-
kircherlab/BCalm: BCalm v1.0.0 ↗Open MIND · 2026not yet assessed
-
Newborn blood DNA methylation and childhood asthma: findings from the ECHO program ↗UNC Libraries · 2026not yet assessed
-
Single-cell spatial transcriptomics reveals immunotherapy-driven bone marrow niche remodeling in AML ↗Science Advances · 2025 · PMID 40632867not yet assessed
-
Newborn blood DNA methylation and childhood asthma: findings from the ECHO program ↗International Journal of Epidemiology · 2025 · PMID 40420521not yet assessed
-
mNSF: multi-sample non-negative spatial factorization ↗Genome biology · 2025 · PMID 40457480not yet assessed
-
Orchestrating Spatial Transcriptomics Analysis with Bioconductor ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41332620not yet assessed
-
Single Cell Spatial Transcriptomics Reveals Immunotherapy-Driven Bone Marrow Niche Remodeling in AML ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 39975227not yet assessed
-
Shared molecular consequences of epigenetic machinery disruption in murine neuronal progenitors ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
Correction: Comprehensive DNA Methylation Analysis Indicates That Pancreatic Intraepithelial Neoplasia Lesions Are Acinar-Derived and Epigenetically Primed for Carcinogenesis ↗Cancer Research · 2025 · PMID 40176543not yet assessed
-
Abstract 1958: Chromatin accessibility landscapes of colorectal cancer development and genome-wide cell-free DNA fragmentation ↗Cancer Research · 2025not yet assessed
-
Sample-specific CpG loci are important for accurate long-read methylation analysis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
-
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks ↗Genome Research · 2025 · PMID 40675817not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
Removing unwanted variation between samples in Hi-C experiments ↗Briefings in Bioinformatics · 2024 · PMID 38711367not yet assessed
-
Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1 ↗PLoS Genetics · 2024 · PMID 38857303not yet assessed
-
Large-scale genotype prediction from RNA sequence data necessitates a new ethical and policy framework ↗Nature Genetics · 2024 · PMID 39039279not yet assessed
-
Spatially-resolved molecular sex differences at single cell resolution in the adult human ventromedial and arcuate hypothalamus ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
-
Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice ↗Genome Research · 2024 · PMID 38702196not yet assessed
-
Multi-sample non-negative spatial factorization ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 39005356not yet assessed
-
Aggregation of <i>recount3</i> RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38328080not yet assessed
-
not yet assessed
-
Supplementary Video S1 from Software for the Integration of Multiomics Experiments in Bioconductor ↗2024not yet assessed
-
Supplementary Video S1 from Software for the Integration of Multiomics Experiments in Bioconductor ↗2024not yet assessed
-
Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗UNC Libraries · 2024not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
T29. SPATIAL-MOLECULAR SEX DIFFERENCES IN THE HUMAN VENTROMEDIAL AND ARCUATE HYPOTHALAMUS ↗European Neuropsychopharmacology · 2024not yet assessed
-
kircherlab/BCalm: BCalm v0.99.0 ↗Open MIND · 2024not yet assessed
-
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes ↗Nature Communications · 2023 · PMID 37429865not yet assessed
-
Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates ↗Genome biology · 2023 · PMID 37885016not yet assessed
-
A functional genomics pipeline to identify high-value asthma and allergy CpGs in the human methylome ↗Journal of Allergy and Clinical Immunology · 2023 · PMID 36754293not yet assessed
-
Comprehensive DNA Methylation Analysis Indicates That Pancreatic Intraepithelial Neoplasia Lesions Are Acinar-Derived and Epigenetically Primed for Carcinogenesis ↗Cancer Research · 2023 · PMID 36989344not yet assessed
-
A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition ↗JCI Insight · 2023 · PMID 38015625not yet assessed
-
Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data ↗Biostatistics · 2023 · PMID 37257175not yet assessed
-
<tt>recountmethylation</tt> enables flexible analysis of public blood DNA methylation array data ↗Bioinformatics Advances · 2023 · PMID 36874953not yet assessed
-
Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation ↗PLoS Genetics · 2023 · PMID 37871105not yet assessed
-
Novel mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37425751not yet assessed
-
Massively parallel single molecule tracking of sequence-dependent DNA mismatch repair <i>in vivo</i> ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
-
Genotype prediction of 336,463 samples from public expression data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 38559266not yet assessed
-
Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37577516not yet assessed
-
Growth retardation in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1 ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
-
not yet assessed
-
Supplemental materials from Software for the Integration of Multiomics Experiments in Bioconductor ↗2023not yet assessed
-
Supplemental materials from Software for the Integration of Multiomics Experiments in Bioconductor ↗2023not yet assessed
-
Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37163127not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
A mammalian methylation array for profiling methylation levels at conserved sequences ↗Nature Communications · 2022 · PMID 35145108not yet assessed
-
Universal prediction of cell-cycle position using transfer learning ↗Genome biology · 2022 · PMID 35101061not yet assessed
-
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space ↗Cell Genomics · 2022 · PMID 35199087not yet assessed
-
Addressing the mean-correlation relationship in co-expression analysis ↗PLoS Computational Biology · 2022 · PMID 35353807not yet assessed
-
not yet assessed
-
Modbamtools: Analysis of single-molecule epigenetic data for long-range profiling, heterogeneity, and clustering ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
Pumping the brakes on RNA velocity – understanding and interpreting RNA velocity estimates ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
Quantification and statistical modeling of Chromium-based single-nucleus RNA-sequencing data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
A Functional Genomics Pipeline to Identify High-Value Asthma and Allergy CpGs in the Human Methylome ↗medRxiv · 2022not yet assessed
-
recountmethylation enables flexible analysis of public blood DNA methylation array data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
-
Non-negative spatial matrix factorization for multi-sample spatial transcriptomics data ↗Faculty of 1000 Research Ltd · 2022not yet assessed
-
recount3: summaries and queries for large-scale RNA-seq expression and splicing ↗Genome biology · 2021 · PMID 34844637not yet assessed
-
Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease ↗Cell · 2021 · PMID 33864768not yet assessed
-
Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Genome biology · 2021 · PMID 33888138not yet assessed
-
Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation ↗eLife · 2021 · PMID 34463256not yet assessed
-
Human methylome variation across Infinium 450K data on the Gene Expression OmnibusNAR Genomics and Bioinformatics · 2021 · PMID 33937763L1 88/100
-
A metabolomics approach identified toxins associated with uremic symptoms in advanced chronic kidney disease ↗Kidney International · 2021 · PMID 34843755not yet assessed
-
Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping ↗Modern Pathology · 2021 · PMID 33536572not yet assessed
-
Serum urate and cardiovascular events in the DCCT/EDIC study ↗Scientific Reports · 2021 · PMID 34244538not yet assessed
-
A mammalian methylation array for profiling methylation levels at conserved sequences ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL) ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
recount3: summaries and queries for large-scale RNA-seq expression and splicing ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Universal prediction of cell cycle position using transfer learning ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Placenta DNA methylation at <i>ZNF300</i> is associated with fetal sex and placental morphology ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Human brain region-specific variably methylated regions (VMRs) are enriched for heritability of distinct neuropsychiatric traits ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
<i>Compartmap</i> enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
not yet assessed
-
Direct inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
not yet assessed
-
Additional file 9 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
Additional file 8 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
not yet assessed
-
not yet assessed
-
Additional file 5 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
not yet assessed
-
not yet assessed
-
Additional file 2 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
Additional file 7 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
not yet assessed
-
Additional file 6 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
not yet assessed
-
Additional file 3 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
Additional file 4 of Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits ↗Figshare · 2021not yet assessed
-
not yet assessed
-
not yet assessed
-
The GTEx Consortium atlas of genetic regulatory effects across human tissues ↗Science · 2020 · PMID 32913098not yet assessed
-
The impact of sex on gene expression across human tissues ↗Science · 2020 · PMID 32913072not yet assessed
-
Cell type–specific genetic regulation of gene expression across human tissues ↗Science · 2020 · PMID 32913075not yet assessed
-
Determinants of telomere length across human tissues ↗Science · 2020 · PMID 32913074not yet assessed
-
A Quantitative Proteome Map of the Human Body ↗Cell · 2020 · PMID 32916130not yet assessed
-
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing ↗Nature Methods · 2020 · PMID 33230324not yet assessed
-
Transcriptomic signatures across human tissues identify functional rare genetic variation ↗Science · 2020 · PMID 32913073not yet assessed
-
A vast resource of allelic expression data spanning human tissues ↗Genome biology · 2020 · PMID 32912332not yet assessed
-
Metabolic effects of air pollution exposure and reversibility ↗Journal of Clinical Investigation · 2020 · PMID 32780721not yet assessed
-
Genetic effects on gene expression across human tissues ↗UNC Libraries · 2020not yet assessed
-
Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance ↗The American Journal of Human Genetics · 2020 · PMID 32800095not yet assessed
-
Promoter CpG density predicts downstream gene loss-of-function intolerance ↗F1000Research · 2020not yet assessed
-
Co-expression analysis is biased by a mean-correlation relationship ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Natural selection acts on epigenetic marks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020 · PMID 32577648not yet assessed
-
Human methylome variation across Infinium 450K data on the Gene Expression Omnibus ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Leveraging the Mendelian Disorders of the Epigenetic Machinery to Systematically Map Functional Epigenetic Variation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
BIOH 458.01: Neuroscience Research TechniquesThe Mathematics Enthusiast · 2020not yet assessed
-
Methylation and accessibility profiling of GM12878, MCF-10A, MCF-7, and MDA-MB-231 using nanopore sequencing ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Improving Metabolic Health Through Precision Dietetics in Mice ↗UNC Libraries · 2020not yet assessed
-
Additional file 6 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
gorkin_qtl_bnbc.tsv.gz ↗Figshare · 2020not yet assessed
-
Additional file 2 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 4 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 3 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 7 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 9 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 8 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Additional file 5 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2020not yet assessed
-
Promoter CpG density predicts downstream gene loss-of-function intolerance ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Linear models enable powerful differential activity analysis in massively parallel reporter assays ↗BMC Genomics · 2019 · PMID 30866806not yet assessed
-
Neuronal brain-region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability ↗Nature Neuroscience · 2019 · PMID 30643296not yet assessed
-
Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Genome biology · 2019 · PMID 31779666not yet assessed
-
Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome ↗JCI Insight · 2019 · PMID 31465303not yet assessed
-
A screen of 1,049 schizophrenia and 30 Alzheimer's‐associated variants for regulatory potential ↗American Journal of Medical Genetics Part B Neuropsychiatric Genetics · 2019 · PMID 31503409not yet assessed
-
Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice ↗JCI Insight · 2019 · PMID 31557133not yet assessed
-
Analyzing whole genome bisulfite sequencing data from highly divergent genotypes ↗Nucleic Acids Research · 2019 · PMID 31392989not yet assessed
-
Coexpression patterns define epigenetic regulators associated with neurological dysfunction ↗Genome Research · 2019 · PMID 30858344not yet assessed
-
Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Precocious Chondrocyte Differentiation Disrupts Skeletal Growth in Kabuki Syndrome Mice ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
SA131A MASSIVELY PARALLEL REPORTER ASSAY FOR VARIANTS ASSOCIATED WITH SCHIZOPHRENIA AND ALZHEIMER'S DISEASE ↗European Neuropsychopharmacology · 2019not yet assessed
-
DNA Methylation ↗2019not yet assessed
-
MOESM2 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Open MIND · 2019not yet assessed
-
MOESM4 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2019not yet assessed
-
MOESM3 of Common DNA sequence variation influences 3-dimensional conformation of the human genome ↗Figshare · 2019not yet assessed
-
Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics ↗Nature Communications · 2018 · PMID 29739930not yet assessed
-
Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Epigenetics & Chromatin · 2018 · PMID 29618374not yet assessed
-
Oxidative Stress and Cardiovascular Risk in Type 1 Diabetes Mellitus: Insights From the DCCT/EDIC Study ↗Journal of the American Heart Association · 2018not yet assessed
-
A screen of 1,049 schizophrenia and 30 Alzheimer’s-associated variants for regulatory potential ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Co-expression patterns define epigenetic regulators associated with neurological dysfunction ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Transcriptional suppression from KMT2D loss disrupts cell cycle and hypoxic responses in neurodevelopmental models of Kabuki syndrome2018not yet assessed
-
Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Testing the Regulatory Consequences of 1,049 Schizophrenia Associated Variants With a Massively Parallel Reporter Assay2018not yet assessed
-
hansenlab/BrainEpigenomeNN: Paper submission ↗Zenodo (CERN European Organization for Nuclear Research) · 2018not yet assessed
-
MOESM20 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM13 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM8 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM4 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM7 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM6 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM15 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM14 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
MOESM5 of Transient reduction of DNA methylation at the onset of meiosis in male mice ↗Figshare · 2018not yet assessed
-
Reproducible RNA-seq analysis using recount2 ↗Nature Biotechnology · 2017 · PMID 28398307not yet assessed
-
Software for the Integration of Multiomics Experiments in Bioconductor ↗Cancer Research · 2017 · PMID 29092936not yet assessed
-
Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses ↗Nature Methods · 2017 · PMID 28245219not yet assessed
-
Improving Metabolic Health Through Precision Dietetics in Mice ↗Genetics · 2017 · PMID 29158425not yet assessed
-
Joint Bounding of Peaks Across Samples Improves Differential Analysis in Mass Spectrometry-Based Metabolomics ↗Analytical Chemistry · 2017 · PMID 28221771not yet assessed
-
Removing unwanted variation between samples in Hi-C experiments ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric disease heritability ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Software for the integration of multi-omics experiments in Bioconductor ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Linear models enable powerful differential activity analysis in massively parallel reporter assays ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Transient Reduction of DNA Methylation at the Onset of Meiosis in Male Mice ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Correcting for cell-type heterogeneity in epigenome-wide association studies: premature analyses and conclusions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
694. RNA-Seq Samples Beyond the Known Transcriptome with Derfinder Available via Recount ↗Biological Psychiatry · 2017not yet assessed
-
Brain region-specific DNA methylation and chromatin accessibility ↗cIRcle (University of British Columbia) · 2017not yet assessed
-
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi ↗Bioinformatics · 2016 · PMID 28035024not yet assessed
-
Epigenomic profiling reveals an association between persistence of DNA methylation and metabolic memory in the DCCT/EDIC type 1 diabetes cohort ↗Proceedings of the National Academy of Sciences · 2016 · PMID 27162351not yet assessed
-
A ketogenic diet rescues hippocampal memory defects in a mouse model of Kabuki syndrome ↗Proceedings of the National Academy of Sciences · 2016 · PMID 27999180not yet assessed
-
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive ↗Genome biology · 2016 · PMID 28038678not yet assessed
-
“Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Epigenetics & Chromatin · 2016 · PMID 27980682not yet assessed
-
Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce ↗Bioinformatics · 2016 · PMID 27153614not yet assessed
-
The Bioconductor channel in F1000Research ↗F1000Research · 2016 · PMID 26998224not yet assessed
-
Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver ↗Genome Research · 2016 · PMID 27737935not yet assessed
-
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
<tt>recount</tt> : A large-scale resource of analysis-ready RNA-seq expression data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
Choice of reference genome can introduce massive bias in bisulfite sequencing data2016not yet assessed
-
Human splicing diversity across the Sequence Read Archive ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
Analyzing whole genome bisulfite sequencing data from highly divergent genotypes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
intropolis: exon-exon junctions across publicly available RNA-seq samples on the Sequence Read Archive ↗Figshare · 2016not yet assessed
-
Scripts/outputs for paper Human splicing diversity across the Sequence Read Archive by Nellore et al. ↗Figshare · 2016not yet assessed
-
“Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
'Gap hunting' to identify multimodal distributions of DNA methylation2016not yet assessed
-
MOESM9 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM4 of â Gap huntingâ to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
intropolis: exon-exon junctions across publicly available RNA-seq samples on the Sequence Read Archive ↗Figshare · 2016not yet assessed
-
MOESM3 of â Gap huntingâ to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM10 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM1 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM5 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM2 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM1 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM11 of â Gap huntingâ to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM11 of â Gap huntingâ to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM2 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM6 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM5 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
MOESM6 of “Gap hunting” to characterize clustered probe signals in Illumina methylation array data ↗Figshare · 2016not yet assessed
-
Orchestrating high-throughput genomic analysis with Bioconductor ↗Nature Methods · 2015 · PMID 25633503not yet assessed
-
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗Genome biology · 2015 · PMID 26316348not yet assessed
-
Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children ↗Nature Communications · 2015 · PMID 25710614not yet assessed
-
Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin ↗Genome biology · 2015 · PMID 25886480not yet assessed
-
DNA methylation is stable during replication and cell cycle arrest ↗Scientific Reports · 2015 · PMID 26648411not yet assessed
-
Public data and open source tools for multi-assay genomic investigation of disease ↗Briefings in Bioinformatics · 2015 · PMID 26463000not yet assessed
-
Testing and Validation of Computational Methods for Mass Spectrometry ↗Journal of Proteome Research · 2015 · PMID 26549429not yet assessed
-
The Bioconductor channel in F1000Research ↗F1000Research · 2015not yet assessed
-
CQN (Conditional Quantile Normalization)2015not yet assessed
-
Bacterial infection remodels the DNA methylation landscape of human dendritic cells ↗Genome Research · 2015 · PMID 26392366not yet assessed
-
Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2015not yet assessed
-
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2015not yet assessed
-
Rail-dbGaP: a protocol and tool for analyzing protected genomic data in a commercial cloud2015not yet assessed
-
Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce ↗bioRxiv (Cold Spring Harbor Laboratory) · 2015not yet assessed
-
Additional file 3 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗Figshare · 2015not yet assessed
-
Additional file 2 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗Figshare · 2015not yet assessed
-
Additional file 1 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗Figshare · 2015not yet assessed
-
Additional file 1 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data ↗Figshare · 2015not yet assessed
-
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays ↗Bioinformatics · 2014 · PMID 24478339not yet assessed
-
Functional normalization of 450k methylation array data improves replication in large cancer studies ↗Genome biology · 2014 · PMID 25599564not yet assessed
-
Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing ↗Nature Methods · 2014 · PMID 25362363not yet assessed
-
Histone deacetylase inhibition rescues structural and functional brain deficits in a mouse model of Kabuki syndrome ↗Science Translational Medicine · 2014 · PMID 25273096not yet assessed
-
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R ↗F1000Research · 2014 · PMID 25285208not yet assessed
-
Differential expression analysis of RNA-seq data at single-base resolution ↗Biostatistics · 2014 · PMID 24398039not yet assessed
-
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R ↗F1000Research · 2014not yet assessed
-
Min tutorial BioC20142014not yet assessed
-
Functional normalization of 450k methylation array data improves replication in large cancer studies ↗bioRxiv (Cold Spring Harbor Laboratory) · 2014not yet assessed
-
Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution ↗Biostatistics · 2014not yet assessed
-
A genome-wide look at DNA methylation ↗cIRcle (University of British Columbia) · 2014not yet assessed
-
Common DNA methylation alterations in multiple brain regions in autism ↗Molecular Psychiatry · 2013 · PMID 23999529not yet assessed
-
illuminaio: An open source IDAT parsing tool for Illumina microarrays ↗F1000Research · 2013 · PMID 24701342not yet assessed
-
Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization ↗Genome Research · 2013 · PMID 24068705not yet assessed
-
Working with the ShortRead Package2013not yet assessed
-
The bsseq user’s guide2013not yet assessed
-
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions ↗Genome biology · 2012 · PMID 23034175not yet assessed
-
Removing technical variability in RNA-seq data using conditional quantile normalization ↗Biostatistics · 2012 · PMID 22285995not yet assessed
-
Reversible switching between epigenetic states in honeybee behavioral subcastes ↗Nature Neuroscience · 2012 · PMID 22983211not yet assessed
-
Social environment is associated with gene regulatory variation in the rhesus macaque immune system ↗Proceedings of the National Academy of Sciences · 2012 · PMID 22493251not yet assessed
-
Laser captured hepatocytes show association of butyrylcholinesterase gene loss and fibrosis progression in hepatitis C-infected drug users ↗Hepatology · 2012 · PMID 22331678not yet assessed
-
Increased methylation variation in epigenetic domains across cancer types ↗Nature Genetics · 2011 · PMID 21706001not yet assessed
-
Sequencing technology does not eliminate biological variability ↗Nature Biotechnology · 2011 · PMID 21747377not yet assessed
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments ↗BMC Bioinformatics · 2010 · PMID 20167110not yet assessed
-
Identification of Functional Elements and Regulatory Circuits by <i>Drosophila</i> modENCODE ↗Science · 2010 · PMID 21177974not yet assessed
-
Biases in Illumina transcriptome sequencing caused by random hexamer priming ↗Nucleic Acids Research · 2010 · PMID 20395217not yet assessed
-
Cloud-scale RNA-sequencing differential expression analysis with Myrna ↗Genome biology · 2010 · PMID 20701754not yet assessed
-
Conservation of an RNA regulatory map between <i>Drosophila</i> and mammals ↗Genome Research · 2010 · PMID 20921232not yet assessed
-
Cloud-scale RNA-sequencing differential2010not yet assessed
-
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE ↗University of Groningen research database (University of Groningen / Centre for Information Technology) · 2010not yet assessed
-
Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in Drosophila ↗PLoS Genetics · 2009 · PMID 19543372not yet assessed
-
Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species ↗PLoS Genetics · 2008 · PMID 19096707not yet assessed
-
aroma.affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memoryUC Berkeley · 2008not yet assessed
-
Computer mouse use predicts acute pain but not prolonged or chronic pain in the neck and shoulder ↗Occupational and Environmental Medicine · 2007 · PMID 17681996not yet assessed
-
Advanced Paternal Age and Risk of Fetal Death: A Cohort Study ↗American Journal of Epidemiology · 2004 · PMID 15583374not yet assessed
-
Fertility pattern does not explain social gradient in breast cancer in denmark ↗International Journal of Cancer · 2004 · PMID 15221976not yet assessed
-
Use of census data for construction of fertility history for Danish women ↗Scandinavian Journal of Public Health · 2004 · PMID 15762028not yet assessed
-
Probing the specificity of the megalin-mediated endocytic pathway by proteomics.UCL Discovery (University College London) · 2003not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Hansen K” paper on PubMed ↗