Vishnu Raghuram

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Species-Wide Phylogenomics of the Staphylococcus aureus <i>Agr</i> Operon Revealed Convergent Evolution of Frameshift Mutations.
  2022 L1 79/100

1 assessed by us (1 reproduced) · 34 not yet assessed — every PubMed paper on record, linked below.

• Genomic surveillance of Salmonella enterica serotype Minnesota strains from poultry products imported into South Africa ↗

  Microbial Genomics · 2026 · PMID 41642222
  not yet assessed
• Intraspecific diversity of <i>Staphylococcus aureus</i> populations isolated from cystic fibrosis respiratory infections ↗

  Microbiology Spectrum · 2026 · PMID 42405791
  not yet assessed
• Genomic surveillance of <i>Salmonella enterica</i> serotype Minnesota strains from poultry products imported into South Africa ↗

  medRxiv · 2025
  not yet assessed
• Average nucleotide identity-based <i>Staphylococcus aureus</i> strain grouping allows identification of strain-specific genes in the pangenome ↗

  mSystems · 2024 · PMID 38934646
  not yet assessed
• Experimentally evolved Staphylococcus aureus shows increased survival in the presence of Pseudomonas aeruginosa by acquiring mutations in the amino acid transporter, GltT ↗

  Microbiology · 2024 · PMID 38426877
  not yet assessed
• Average Nucleotide Identity based <i>Staphylococcus aureus</i> strain grouping allows identification of strain-specific genes in the pangenome ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38352482
  not yet assessed
• Staphylococcus aureus pangenome based on 7,954 substrains ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2024
  not yet assessed
• Staphylococcus aureus pangenome based on 7,954 substrains ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2024
  not yet assessed
• Staphylococcus aureus pangenome based on 7,954 substrains ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2024
  not yet assessed
• Intraspecific Diversity of <i>Staphylococcus aureus</i> Populations Isolated from Cystic Fibrosis Respiratory Infections ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 39605409
  not yet assessed
• Referee report. For: Identification of pathogenic-specific open reading frames in staphylococci species [version 1; peer review: 2 not approved] ↗

  Faculty of 1000 Research Ltd · 2024
  not yet assessed
• AllTheBacteria: a community resource empowers biology and discovers novel peptide antibiotics ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 42465405
  not yet assessed
• Comparison of genomic diversity between single and pooled Staphylococcus aureus colonies isolated from human colonization cultures ↗

  Microbial Genomics · 2023 · PMID 37934072
  not yet assessed
• Efficacy of a <i>Pseudomonas aeruginosa</i> serogroup O9 vaccine ↗

  Infection and Immunity · 2023 · PMID 37991349
  not yet assessed
• A community-curated, global atlas of <i>Bacillus cereus sensu lato</i> genomes for epidemiological surveillance ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Comparison of genomic diversity between single and pooled <i>Staphylococcus aureus</i> colonies isolated from human colonisation cultures ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37397999
  not yet assessed
• Efficacy of a <i>Pseudomonas aeruginosa</i> Serogroup O9 Vaccine ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37502855
  not yet assessed
• Experimentally Evolved <i>Staphylococcus aureus</i> Survives in the Presence of <i>Pseudomonas aeruginosa</i> by Acquiring Mutations in the Amino Acid Transporter, GltT ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37546966
  not yet assessed
• Staphylococcus aureus pangenome based on 7,954 substrains ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• Raw data for the Genomic Analysis of Singles and Pools (GASP) project. Code for analysis available in github: github.com/VishnuRaghuram94/GASP. ↗

  Figshare · 2023
  not yet assessed
• Species-Wide Phylogenomics of the Staphylococcus aureus <i>Agr</i> Operon Revealed Convergent Evolution of Frameshift Mutations

  Microbiology Spectrum · 2022 · PMID 35044202
  L1 79/100
• Staphylococcus aureus and Pseudomonas aeruginosa Isolates from the Same Cystic Fibrosis Respiratory Sample Coexist in Coculture ↗

  Microbiology Spectrum · 2022 · PMID 35867391
  not yet assessed
• Species-wide phylogenomics of the <i>Staphylococcus aureus agr</i> operon reveals convergent evolution of frameshift mutations ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa ↗

  mBio · 2020 · PMID 32576671
  not yet assessed
• The histone-like protein AlgP regulon is distinct in mucoid and nonmucoid Pseudomonas aeruginosa and does not include alginate biosynthesis genes ↗

  Microbiology · 2020 · PMID 32634088
  not yet assessed
• Overproduction of the AlgT Sigma Factor Is Lethal to Mucoid Pseudomonas aeruginosa ↗

  Journal of Bacteriology · 2020 · PMID 32747430
  not yet assessed
• Draft Genome Sequences of Eight Pseudomonas aeruginosa Corneal Infection Isolates ↗

  Microbiology Resource Announcements · 2020 · PMID 31896638
  not yet assessed
• Noncanonical Cell Death Induction by Reassortant Reovirus ↗

  Journal of Virology · 2020 · PMID 32847857
  not yet assessed
• Overproduction of the AlgT sigma factor is lethal to mucoid <i>Pseudomonas aeruginosa</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Non-canonical cell death by reassortant reovirus ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters ↗

  Genome biology · 2019 · PMID 31405375
  not yet assessed
• Analysis of <i>Vibrio cholerae</i> genomes using a novel bioinformatic tool identifies new, active Type VI Secretion System gene clusters ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• NLRP3 Inflammasome Mediated Production of Th1/Th17 Cytokines in Response to Inflammatory Stimulants in Innate Immune Cells ↗

  Turkish Journal of Immunology · 2019
  not yet assessed
• Genotypic and phenotypic diversity of <i>Staphylococcus aureus</i> from cystic fibrosis lung infections and their interactions with <i>Pseudomonas aeruginosa</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Alleviation of the Temperature-Sensitive Paralytic Phenotype of<i>Shibire</i>^TSMutants in<i>Drosophila</i>by Sub-Anesthetic Concentrations of Carbon Dioxide ↗

  Journal of Neurogenetics · 1996 · PMID 8923296
  not yet assessed