Chad Laing

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural L
  2016 L1 89/100

1 assessed by us (1 reproduced) · 65 not yet assessed — every PubMed paper on record, linked below.

• Crossing the streams: improving data quality and integration across the One Health genomics continuum with data standards and implementation strategies ↗

  Canadian Journal of Microbiology · 2025 · PMID 39832351
  not yet assessed
• WaveSeekerNet: accurate prediction of influenza A virus subtypes and host source using attention-based deep learning ↗

  GigaScience · 2025 · PMID 40880133
  not yet assessed
• Machine learning methods to identify markers and predict antimicrobial resistance in <i>Escherichia coli</i> ↗

  Canadian Journal of Microbiology · 2025 · PMID 41151064
  not yet assessed
• WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study ↗

  eLife · 2025
  not yet assessed
• Author response: Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study ↗

  2025
  not yet assessed
• Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: A genomic epidemiology study ↗

  eLife · 2025
  not yet assessed
• Author response: Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: A genomic epidemiology study ↗

  2025
  not yet assessed
• MNBC: a multithreaded Minimizer-based Naïve Bayes Classifier for improved metagenomic sequence classification ↗

  Bioinformatics · 2024 · PMID 39388213
  not yet assessed
• Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: A genomic epidemiology study ↗

  eLife · 2024 · PMID 39878305
  not yet assessed
• The broom of the system: a harmonized contextual data specification for One Health AMR pathogen genomic surveillance ↗

  2024
  not yet assessed
• The broom of the system: a harmonized contextual data specification for One Health AMR pathogen genomic surveillance ↗

  2024
  not yet assessed
• Persistent Cross-Species Transmission Systems Dominate Shiga Toxin-Producing Escherichia Coli O157:H7 Epidemiology in a High Incidence Region: A Genomic Epidemiology Study ↗

  SSRN Electronic Journal · 2024
  not yet assessed
• Persistent cross-species transmission systems dominate Shiga toxin-producing <i>Escherichia coli</i> O157:H7 epidemiology in a high incidence region: a genomic epidemiology study ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Author response: Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study ↗

  2024
  not yet assessed
• Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study ↗

  eLife · 2024
  not yet assessed
• Harmonizing/integrating surveillance data in the One Health continuum: The GRDI One Health AMR pathogen genomic surveillance contextual data standard

  HAL (Le Centre pour la Communication Scientifique Directe) · 2024
  not yet assessed
• Commensal Escherichia coli Strains of Bovine Origin Competitively Mitigated Escherichia coli O157:H7 in a Gnotobiotic Murine Intestinal Colonization Model with or without Physiological Stress ↗

  Animals · 2023 · PMID 37627368
  not yet assessed
• Genomic Analysis of Shiga Toxin-Producing E. coli O157 Cattle and Clinical Isolates from Alberta, Canada ↗

  Toxins · 2022 · PMID 36136541
  not yet assessed
• ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data ↗

  Microbial Genomics · 2021 · PMID 34860150
  not yet assessed
• Antibiotic Resistance in Shiga Toxigenic Escherichia coli Isolates from Surface Waters and Sediments in a Mixed Use Urban Agricultural Landscape ↗

  Antibiotics · 2021 · PMID 33652953
  not yet assessed
• Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel ↗

  Microbial Genomics · 2021 · PMID 34554082
  not yet assessed
• Assessing the genomic relatedness and evolutionary rates of persistent verotoxigenic Escherichia coli serotypes within a closed beef herd in Canada ↗

  Microbial Genomics · 2020 · PMID 32496181
  not yet assessed
• Application of artificial intelligence to the in silico assessment of antimicrobial resistance and risks to human and animal health presented by priority enteric bacterial pathogens ↗

  Canada Communicable Disease Report · 2020 · PMID 32673383
  not yet assessed
• Decontamination of <i>Bacillus anthracis</i> Spores at Subzero Temperatures by Complete Submersion ↗

  Applied Biosafety · 2020 · PMID 36033960
  not yet assessed
• Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Application de l’intelligence artificielle à l’évaluation in silico de la résistance aux antimicrobiens et des risques pour la santé humaine et animale présentés par les pathogènes bactériens entériques prioritaires ↗

  Relevé des maladies transmissibles au Canada · 2020
  not yet assessed
• Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada ↗

  Microbiology Resource Announcements · 2019 · PMID 31601655
  not yet assessed
• Reply to Baba and Kanamori ↗

  Clinical Infectious Diseases · 2019 · PMID 31711208
  not yet assessed
• Phylogeographic Analysis Reveals Multiple International transmission Events Have Driven the Global Emergence of Escherichia coli O157:H7 ↗

  Clinical Infectious Diseases · 2018 · PMID 30371758
  not yet assessed
• Multi-Year Persistence of Verotoxigenic Escherichia coli (VTEC) in a Closed Canadian Beef Herd: A Cohort Study ↗

  Frontiers in Microbiology · 2018 · PMID 30233526
  not yet assessed
• Targeting discriminatory SNPs in Salmonella enterica serovar Heidelberg genomes using RNase H2-dependent PCR ↗

  Journal of Microbiological Methods · 2018 · PMID 30592979
  not yet assessed
• Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses ↗

  Database · 2018 · PMID 30212910
  not yet assessed
• Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress ↗

  Frontiers in Microbiology · 2017 · PMID 28337186
  not yet assessed
• Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar ↗

  Frontiers in Microbiology · 2017 · PMID 28824552
  not yet assessed
• Genomic Analysis of Third Generation Cephalosporin Resistant Escherichia coli from Dairy Cow Manure ↗

  Veterinary Sciences · 2017 · PMID 29149094
  not yet assessed
• Phylotyper: <i>in silico</i> predictor of gene subtypes ↗

  Bioinformatics · 2017 · PMID 29036291
  not yet assessed
• The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies ↗

  PLoS ONE · 2016 · PMID 26800248
  not yet assessed
• Comparative Genomic Analysis of Mannheimia haemolytica from Bovine Sources ↗

  PLoS ONE · 2016 · PMID 26926339
  not yet assessed
• Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle ↗

  PLoS ONE · 2016 · PMID 27018858
  not yet assessed
• SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli ↗

  BMC Microbiology · 2016 · PMID 27067409
  not yet assessed
• Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape

  Frontiers in Cellular and Infection Microbiology · 2016 · PMID 27092297
  L1 89/100
• Transcriptomic profiling of Arabidopsis thaliana plants exposed to the human pathogen Escherichia coli O157-H7 ↗

  Biocatalysis and Agricultural Biotechnology · 2016
  not yet assessed
• Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association ↗

  Scientific Reports · 2015 · PMID 26442781
  not yet assessed
• Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems ↗

  International Journal of Food Microbiology · 2014 · PMID 25051454
  not yet assessed
• A new pyrosequencing assay for rapid detection and genotyping of Shiga toxin, intimin and O157-specific rfbE genes of Escherichia coli ↗

  Journal of Microbiological Methods · 2014 · PMID 25523243
  not yet assessed
• SuperPhy - A Pilot Resource for Integrated Phylogenetic and Epidemiological Analysis of Pathogens ↗

  2014
  not yet assessed
• Corrigendum to “Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems” [Int. J. Food Microbiol. 187 (2014) 57–72] ↗

  International Journal of Food Microbiology · 2014
  not yet assessed
• Insights from Genomic Studies of the Foodborne and Waterborne Pathogen<i>Escherichia coli</i>O157:H7 ↗

  ASM Press eBooks · 2014
  not yet assessed
• Characteristics of Clinical Shiga Toxin-Producing<i>Escherichia coli</i>Isolated from British Columbia ↗

  BioMed Research International · 2013 · PMID 24199201
  not yet assessed
• The evolution of the pan-genome of Shiga-toxin (Stx) producing Escherichia coli and the Stx₂ bacteriophage

  Open ULeth Scholarship (OPUS) (University of Lethbridge) · 2013
  not yet assessed
• A Dynamic Whole-genome Database for Comparative Analyses, Molecular Epidemiology and Phenotypic Summary of Bacterial Pathogens ↗

  2013
  not yet assessed
• Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed ↗

  Journal of Environmental Quality · 2012 · PMID 22218192
  not yet assessed
• A Comparison of Shiga-Toxin 2 Bacteriophage from Classical Enterohemorrhagic Escherichia coli Serotypes and the German E. coli O104:H4 Outbreak Strain ↗

  PLoS ONE · 2012 · PMID 22649523
  not yet assessed
• Everything at once: Comparative analysis of the genomes of bacterial pathogens ↗

  Veterinary Microbiology · 2011 · PMID 21764529
  not yet assessed
• Identification of a novel prophage regulator in <i>Escherichia coli</i> controlling the expression of type III secretion ↗

  Molecular Microbiology · 2011 · PMID 22111928
  not yet assessed
• Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0 ↗

  Infection Genetics and Evolution · 2011 · PMID 22001825
  not yet assessed
• Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions ↗

  BMC Bioinformatics · 2010 · PMID 20843356
  not yet assessed
• Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada ↗

  Water Research · 2010 · PMID 20971491
  not yet assessed
• In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence ↗

  BMC Genomics · 2009 · PMID 19563677
  not yet assessed
• Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by <i>Escherichia coli</i> O157:H7 Strains ↗

  Applied and Environmental Microbiology · 2009 · PMID 19948861
  not yet assessed
• Genomic Regions Conserved in Lineage II <i>Escherichia coli</i> O157:H7 Strains ↗

  Applied and Environmental Microbiology · 2009 · PMID 19329668
  not yet assessed
• Two distinct groups of porcine enteropathogenic Escherichia coli strains of serogroup O45 are revealed by comparative genomic hybridization and virulence gene microarray ↗

  BMC Genomics · 2009 · PMID 19709428
  not yet assessed
• Genotypic Characterization and Prevalence of Virulence Factors among Canadian <i>Escherichia coli</i> O157:H7 Strains ↗

  Applied and Environmental Microbiology · 2008 · PMID 18487402
  not yet assessed
• Rapid Determination of<i>Escherichia coli</i>O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting ↗

  Applied and Environmental Microbiology · 2008 · PMID 18791027
  not yet assessed
• Genome evolution in major Escherichia coli O157:H7 lineages ↗

  BMC Genomics · 2007 · PMID 17506902
  not yet assessed