Jan Hasenauer
Reproducibility track record
1
assessed papers
100/100
mean reproducibility
1
reproduced (C1–C2)
0
flagged
0
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
—
Funders
—
Frequent co-authors
K. Gunasekaran 1Alexander Pfeifer 1Dagmar Wachten 1Gerhard Heldmaier 1Markus Heine 1Ronja Kardinal 1J. de Witt 1Tabea Elschner 1Hildigunnur Hermannsdóttir 1Jiangyan Yu 1
Institutions
University of Bonn 1Life & Brain (Germany) 1University Hospital Bonn 1Weihenstephan-Triesdorf University of Applied Sciences 1Technical University of Munich 1Universität Hamburg 1
Geography (author institutions)
DE 1FI 1AT 1LU 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
Complete publication record (397)
Request a reproduction →1 assessed by us (1 reproduced) · 396 not yet assessed — every PubMed paper on record, linked below.
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Dataset for the manuscript "Longitudinal spatial neutrophil profiling during ACT in murine melanoma reveals distinct lymph node infiltration patterns" ↗Zenodo (CERN European Organization for Nuclear Research) · 2027not yet assessed
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Coupled epidemiological and wastewater modeling at the urban scale: A case study for Munich ↗iScience · 2026 · PMID 42541266not yet assessed
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Nonlinear mixed-effect models and tailored parametrization schemes enables integration of single cell and bulk data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Data-driven model reveals increased stability of CAG-expanded huntingtin RNA due to MID1 binding ↗PLoS Computational Biology · 2026 · PMID 42228743not yet assessed
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Assessment of simulation-based inference methods for stochastic compartmental models in epidemiological research ↗PLoS ONE · 2026 · PMID 42441563not yet assessed
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SBMLImporter.jl ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Balancing label resolution and computational cost in dynamical models of lipid metabolism ↗arXiv (Cornell University) · 2026not yet assessed
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Dataset for the manuscript "Longitudinal spatial neutrophil profiling during ACT in murine melanoma reveals distinct lymph node infiltration patterns" ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Linking Host Covariates to COVID-19 Vaccine-Induced Antibody Dynamics in a Large Healthcare Worker Cohort ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Balancing label resolution and computational cost in dynamical models of lipid metabolismarXiv (Cornell University) · 2026not yet assessed
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AI-assisted continuous-time modelling of metastatic breast cancer reveals subtype-specific spatiotemporal organ interactions ↗medRxiv · 2026not yet assessed
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Code for the Paper "NoLimits.jl: Flexible and Composable Nonlinear Mixed-Effects Modeling in Julia" ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Code for the Paper "NoLimits.jl: Flexible and Composable Nonlinear Mixed-Effects Modeling in Julia" ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Injury prediction in elite women’s football: an integrative machine learning-based decision-support framework ↗npj Digital Medicine · 2026 · PMID 42420477not yet assessed
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Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences: supplementary code and data ↗Open MIND · 2026not yet assessed
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Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences: supplementary code and data ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Privacy-Preserving Matching for Federated Causal Inference in Multicentre Patient Cohorts ↗medRxiv · 2026not yet assessed
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Longitudinal immune profiling of Long COVID phenotypes reveals a shared persistent IL-17F-centered immune signature ↗Research Square · 2026not yet assessed
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Replication files for: Longitudinal immune profiling of Long COVID phenotypes reveals a shared persistent IL-17F-centered immune signature ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Replication files for: Longitudinal immune profiling of Long COVID phenotypes reveals a shared persistent IL-17F-centered immune signature ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Quantitative modelling of P-TEFb mediated CTD phosphorylation identifies local cooperativity ↗PLoS Computational Biology · 2026 · PMID 42531208not yet assessed
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Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Supplementary Code: Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Dataset for the manuscript "Longitudinal spatial neutrophil profiling during ACT in murine melanoma reveals distinct lymph node infiltration patterns" ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Supplementary Code: Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Supplementary Code: Mathematical Modeling of the Canonical Aryl Hydrocarbon Receptor Pathway ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Supplementary Code: Mathematical Modeling of the Canonical Aryl Hydrocarbon Receptor Pathway ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Mathematical Modeling of the Canonical Aryl Hydrocarbon Receptor Pathway ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Efficient Bayesian inference for ordinary differential equation models from experimental data with uncertain measurement times ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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SBMLImporter.jl ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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SBMLImporter.jl ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Kupffer cell programming by maternal obesity triggers fatty liver disease ↗Nature · 2025 · PMID 40533564not yet assessed
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Current state and open problems in universal differential equations for systems biology ↗npj Systems Biology and Applications · 2025 · PMID 40885733not yet assessed
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Assessment of uncertainty quantification in universal differential equations ↗Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · 2025 · PMID 40172556not yet assessed
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NKG7 is a Stable Marker of Cytotoxicity Across Immune Contexts and Within the Tumor Microenvironment ↗European Journal of Immunology · 2025 · PMID 40538191not yet assessed
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Integrative modeling of the spread of serious infectious diseases and corresponding wastewater dynamics ↗Epidemics · 2025 · PMID 40479902not yet assessed
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PEtab.jl: advancing the efficiency and utility of dynamic modelling ↗Bioinformatics · 2025 · PMID 40924544not yet assessed
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C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels ↗Nature Methods · 2025 · PMID 41345772not yet assessed
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A dynamic model for Waddington’s landscape accounting for cell-to-cell communication ↗Mathematical Biosciences · 2025 · PMID 40976482not yet assessed
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A stochastic modelling framework for cancer patient trajectories: combining tumour growth, metastasis, and survival ↗Journal of Mathematical Biology · 2025 · PMID 40402308not yet assessed
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Developmental programming by maternal obesity alters offspring lifespan and immune responses in a diet- and sex-specific manner ↗Cells and Development · 2025 · PMID 40653017not yet assessed
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Identifiability and uncertainty for ordinary differential equation models with qualitative or semiquantitative data ↗Current Opinion in Systems Biology · 2025not yet assessed
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Continuous Circulation of Hepatitis E and A Viruses During COVID-19 Pandemic Lockdowns in Munich, Germany—Experience from Three Years of Wastewater Surveillance ↗Microorganisms · 2025 · PMID 41156838not yet assessed
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Loss formulations for assumption-free neural inference of SDE coefficient functions ↗npj Systems Biology and Applications · 2025 · PMID 40025020not yet assessed
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EPH58 Evaluating the Cost-Effectiveness of Wastewater-Based Disease Surveillance ↗Value in Health · 2025not yet assessed
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PEtab Select: specification standard and supporting software for automated model selection ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Pseudo-time trajectory of single-cell lipidomics: Suggestion for experimental setup and computational analysis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Shiny-Calorie: A context-aware application for indirect calorimetry data analysis and visualization using R ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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PEtab.jl: Advancing the Efficiency and Utility of Dynamic Modelling ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Compositional amortized inference for large-scale hierarchical Bayesian models ↗arXiv (Cornell University) · 2025not yet assessed
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HDL-associated phosphatidylserine blunts myeloid activation and protects from atherosclerosis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41394657not yet assessed
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Effects of time-of-day on the noradrenaline, adrenaline, cortisol and blood lipidome response to an ice bath ↗Scientific Reports · 2025 · PMID 39779795not yet assessed
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NKG7 is a stable marker of cytotoxicity across immune contexts and within the tumor microenvironment ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Parameter Estimation and Model Selection for the Quantitative Analysis of Oncolytic Virus Therapy in Zebrafish <sup>⋆</sup> ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Informed Injury Prediction in Elite Football: Decision Theory meets Machine Learning ↗medRxiv · 2025not yet assessed
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miR-196a-5p and miR-342-3p mediate skeletal muscle and thermogenic adipose tissue crosstalk through extracellular vesicles ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Privacy-Preserving Opt-Out from Homomorphically Encrypted Clinical Trials ↗Studies in health technology and informatics · 2025 · PMID 40588977not yet assessed
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Parameter Estimation and Model Selection for the Quantitative Analysis of Oncolytic Virus Therapy in Zebrafish ↗IFAC-PapersOnLine · 2025not yet assessed
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From Brown to White: Brown Adipose Tissue Endothelial Cells whiten in Culture Conditions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using RBioinformatics Advances · 2025 · PMID 41640623L1 100/100
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Identifying Multi-omics Signatures that characterize Responders to Plant-based Dietary Interventions ↗medRxiv · 2025not yet assessed
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Using latent representations to link disjoint longitudinal data for mixed-effects regression ↗arXiv (Cornell University) · 2025not yet assessed
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PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems ↗arXiv (Cornell University) · 2025not yet assessed
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not yet assessed
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Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$ ↗arXiv (Cornell University) · 2025not yet assessed
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pyPESTO - Parameter EStimation TOolbox for python ↗Zenodo (CERN European Organization for Nuclear Research) · 2025not yet assessed
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Endothelial deletion of ADGRF5 (GPR116) promotes fibro-inflammatory EndMT and impairs adaptive thermogenesis in brown adipose tissue ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity ↗Zenodo (CERN European Organization for Nuclear Research) · 2025not yet assessed
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Supplementary Code: Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models ↗Zenodo (CERN European Organization for Nuclear Research) · 2025not yet assessed
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TGF-β specifies T <sub>FH</sub> versus T <sub>H</sub> 17 cell fates in murine CD4 <sup>+</sup> T cells through c-Maf ↗Science Immunology · 2024 · PMID 38427718not yet assessed
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Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity ↗Nature Communications · 2024 · PMID 38658564not yet assessed
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Machine Learning Methods for Precision Dosing in Anticancer Drug Therapy: A Scoping Review ↗Clinical Pharmacokinetics · 2024 · PMID 39153056not yet assessed
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Spectral Analysis of Human Retinal Pigment Epithelium Cells in Healthy and AMD Eyes ↗Investigative Ophthalmology & Visual Science · 2024 · PMID 38170540not yet assessed
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Processivity and specificity of histone acetylation by the male-specific lethal complex ↗Nucleic Acids Research · 2024 · PMID 38407474not yet assessed
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Personalized Lens Correction Improves Quantitative Fundus Autofluorescence Analysis ↗Investigative Ophthalmology & Visual Science · 2024 · PMID 38466288not yet assessed
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Missing data in amortized simulation-based neural posterior estimation ↗PLoS Computational Biology · 2024 · PMID 38885265not yet assessed
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DataSHIELD: mitigating disclosure risk in a multi-site federated analysis platform ↗Bioinformatics Advances · 2024 · PMID 40191546not yet assessed
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Non-Negative Universal Differential Equations With Applications in Systems Biology ↗IFAC-PapersOnLine · 2024not yet assessed
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Spatially Resolved Association of Structural Biomarkers on Retinal Function in Non-Exudative Age-Related Macular Degeneration Over 4 Years ↗Investigative Ophthalmology & Visual Science · 2024 · PMID 38687492not yet assessed
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Retro Mode Imaging for Detection and Quantification of Sub-RPE Drusen and Subretinal Drusenoid Deposits in Age-Related Macular Degeneration ↗Journal of Clinical Medicine · 2024 · PMID 39064170not yet assessed
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Hawkes Process Modelling for Chemical Reaction Networks in a Random Environment ↗SIAM Journal on Applied Dynamical Systems · 2024not yet assessed
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Impact of lens autofluorescence and opacification on retinal imaging ↗BMJ Open Ophthalmology · 2024 · PMID 38684375not yet assessed
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Evolution of protective SARS-CoV-2-specific B and T cell responses upon vaccination and Omicron breakthrough infection ↗iScience · 2024 · PMID 38974469not yet assessed
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Benchmarking methods for computing local sensitivities in ordinary differential equation models at dynamic and steady states ↗PLoS ONE · 2024 · PMID 39441813not yet assessed
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Federated difference-in-differences with multiple time periods in DataSHIELD ↗iScience · 2024 · PMID 39498304not yet assessed
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Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data ↗Bioinformatics · 2024not yet assessed
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Tailoring COVID-19 Vaccination Strategies in High-Seroprevalence Settings: Insights from Ethiopia ↗Vaccines · 2024 · PMID 39066383not yet assessed
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From Planning Stage Towards FAIR Data: A Practical Metadatasheet For Biomedical Scientists ↗Scientific Data · 2024 · PMID 38778016not yet assessed
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Universal differential equations for systems biology: Current state and open problems ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Anabolic lipid metabolism regulates adipose type 2 innate lymphoid cell differentiation to maintain metabolic health ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Integrative Modeling of the Spread of Serious Infectious Diseases and Corresponding Wastewater Dynamics ↗medRxiv · 2024not yet assessed
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Exploration of methods for computing sensitivities in ODE models at dynamic and steady states ↗arXiv (Cornell University) · 2024not yet assessed
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C-COMPASS: A Neural Network Tool for Multi-Omic Classification of Cell Compartments ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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A Dynamic Model for Waddington's Landscape Accounting for Cell-to-Cell Communication ↗SSRN Electronic Journal · 2024not yet assessed
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From Planning Stage To FAIR Data: A Practical Metadatasheet For Biomedical Scientists ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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A wall-time minimizing parallelization strategy for approximate Bayesian computation ↗PLoS ONE · 2024 · PMID 38386671not yet assessed
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Assessment of Uncertainty Quantification in Universal Differential Equations ↗arXiv (Cornell University) · 2024not yet assessed
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Non-Negative Universal Differential Equations With Applications in Systems Biology ↗arXiv (Cornell University) · 2024not yet assessed
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Cholesterol-lowering effects of oats induced by microbially produced phenolic metabolites ↗Research Square · 2024not yet assessed
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Cholesterol-lowering effects of oats induced by microbially produced phenolic metabolites ↗Research Square · 2024not yet assessed
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A Stochastic Modelling Framework for Cancer Patient Trajectories: Combining Tumour Growth, Metastasis, and Survival ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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cOmicsArt – a customizable Omics Analysis and reporting tool ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Do endocrine and lipid responses to an ice bath depend on the time of day? ↗Research Square · 2024not yet assessed
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not yet assessed
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cOmicsArt—a customizable Omics Analysis and reporting tool ↗Bioinformatics Advances · 2024 · PMID 40385593not yet assessed
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Clinical phenotypes and quality of life to define post-COVID-19 syndrome: a cluster analysis of the multinational, prospective ORCHESTRA cohort ↗EClinicalMedicine · 2023 · PMID 37654668not yet assessed
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Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease ↗Cell Reports · 2023 · PMID 37243592not yet assessed
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pyPESTO: a modular and scalable tool for parameter estimation for dynamic models ↗Bioinformatics · 2023 · PMID 37995297not yet assessed
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Nucleocapsid-specific T cell responses associate with control of SARS-CoV-2 in the upper airways before seroconversion ↗Nature Communications · 2023 · PMID 37225706not yet assessed
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Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts ↗Epidemics · 2023 · PMID 36931114not yet assessed
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Hyper-Reflective Foci in Intermediate Age-Related Macular Degeneration: Spatial Abundance and Impact on Retinal Morphology ↗Investigative Ophthalmology & Visual Science · 2023 · PMID 36705929not yet assessed
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Using machine learning to predict antibody response to SARS-CoV-2 vaccination in solid organ transplant recipients: the multicentre ORCHESTRA cohort ↗Clinical Microbiology and Infection · 2023 · PMID 37150358not yet assessed
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Health-Related Quality of Life as Assessed by the EQ-5D-5L Predicts Outcomes of Patients Treated with Azacitidine—A Prospective Cohort Study by the AGMT ↗Cancers · 2023 · PMID 36900181not yet assessed
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How European Research Projects Can Support Vaccination Strategies: The Case of the ORCHESTRA Project for SARS-CoV-2 ↗Vaccines · 2023 · PMID 37631929not yet assessed
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FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes ↗Bioinformatics · 2023 · PMID 37947308not yet assessed
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Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks ↗PLoS Computational Biology · 2023 · PMID 36595539not yet assessed
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Retest variability and patient reliability indices of quantitative fundus autofluorescence in age-related macular degeneration: a MACUSTAR study report ↗Scientific Reports · 2023 · PMID 37833348not yet assessed
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Accessibility of covariance information creates vulnerability in Federated Learning frameworks ↗Bioinformatics · 2023 · PMID 37647639not yet assessed
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Socioeconomic and risk-related drivers of compliance with measures to prevent SARS-CoV-2 infection: evidence from the Munich-based KoCo19 study ↗BMC Public Health · 2023 · PMID 37170091not yet assessed
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Posterior marginalization accelerates Bayesian inference for dynamical models of biological processes ↗iScience · 2023 · PMID 37867942not yet assessed
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Studying temporal titre evolution of commercial SARS-CoV-2 assays reveals significant shortcomings of using BAU standardization for comparison ↗Virology Journal · 2023 · PMID 37658454not yet assessed
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Modeling early treatment response in AML from cell-free tumor DNA ↗iScience · 2023 · PMID 38047080not yet assessed
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Informative and adaptive distances and summary statistics in sequential approximate Bayesian computation ↗PLoS ONE · 2023 · PMID 37216372not yet assessed
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The representative COVID-19 cohort Munich (KoCo19): from the beginning of the pandemic to the Delta virus variant ↗BMC Infectious Diseases · 2023 · PMID 37442952not yet assessed
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IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line ↗Bioinformatics · 2023 · PMID 36943334not yet assessed
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Validation of genetic variants from NGS data using deep convolutional neural networks ↗BMC Bioinformatics · 2023 · PMID 37081386not yet assessed
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Cox proportional hazards deep neural network identifies peripheral blood complete remission to be at least equivalent to morphologic complete remission in predicting outcomes of patients treated with azacitidine—A prospective cohort study by the <scp>AGMT</scp> ↗American Journal of Hematology · 2023 · PMID 37548390not yet assessed
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FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI ↗Lecture notes in computer science · 2023not yet assessed
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Developmental programming of Kupffer cells by maternal obesity causes fatty liver disease in the offspring ↗Research Square · 2023not yet assessed
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pyPESTO: A modular and scalable tool for parameter estimation for dynamic models ↗arXiv (Cornell University) · 2023not yet assessed
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An amortized approach to non-linear mixed-effects modeling based on neural posterior estimation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Early-stage idiopathic pulmonary fibrosis is characterized by bronchoalveolar accumulation of SPP1 <sup>+</sup> macrophages ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Missing data in amortized simulation-based neural posterior estimation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Long-term monitoring of SARS-CoV-2 seroprevalence and variants in Ethiopia provides prediction for immunity and cross-immunity ↗Research Square · 2023not yet assessed
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Posterior Marginalization Accelerates Bayesian Inference for Dynamical Models of Biological Processes ↗SSRN Electronic Journal · 2023not yet assessed
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A Wall-time Minimizing Parallelization Strategy for Approximate Bayesian Computation ↗DOAJ (DOAJ: Directory of Open Access Journals) · 2023not yet assessed
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A Wall-time Minimizing Parallelization Strategy for Approximate Bayesian Computation ↗arXiv (Cornell University) · 2023not yet assessed
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A more expressive spline representation for SBML models improves code generation performance in AMICI ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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Supplementary Code to An amortized approach to non-linear mixed-effects modeling based on neural posterior estimation ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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Evolution of protective SARS-CoV-2-specific B- and T-cell responses upon vaccination and Omicron breakthrough infection ↗Research Square · 2023not yet assessed
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Privacy-preserving impact evaluation using Difference-in-Differences ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Missing data in amortized simulation-based neural posterior estimation ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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Missing data in amortized simulation-based neural posterior estimation ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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MEmilio v2.2.0 - A high performance Modular EpideMIcs simuLatIOn software ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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MEmilio v2.3.0 - A high performance Modular EpideMIcs simuLatIOn software ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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MEmilio v2.4.0 - A high performance Modular EpideMIcs simuLatIOn software ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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Challenges of data sharing in European Covid-19 projects: A learning opportunity for advancing pandemic preparedness and response ↗The Lancet Regional Health - Europe · 2022 · PMID 35942201not yet assessed
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Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation ↗Frontiers in Immunology · 2022 · PMID 35979364not yet assessed
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pyABC: Efficient and robust easy-to-use approximateBayesian computation ↗The Journal of Open Source Software · 2022not yet assessed
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Assessment of Prediction Uncertainty Quantification Methods in Systems Biology ↗IEEE Transactions on Computational Biology and Bioinformatics · 2022 · PMID 36223355not yet assessed
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Histologic Cell Shape Descriptors for the Retinal Pigment Epithelium in Age-Related Macular Degeneration: A Comparison to Unaffected Eyes ↗Translational Vision Science & Technology · 2022 · PMID 35984669not yet assessed
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Mini-batch optimization enables training of ODE models on large-scale datasets ↗Nature Communications · 2022 · PMID 35013141not yet assessed
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The interplay of viral loads, clinical presentation, and serological responses in SARS-CoV-2 – Results from a prospective cohort of outpatient COVID-19 cases ↗Virology · 2022 · PMID 35245784not yet assessed
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Identifiability analysis for models of the translation kinetics after mRNA transfection ↗Journal of Mathematical Biology · 2022 · PMID 35577967not yet assessed
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Combining gene expression analysis of gastric cancer cell lines and tumor specimens to identify biomarkers for anti-HER therapies—the role of HAS2, SHB and HBEGF ↗BMC Cancer · 2022 · PMID 35264144not yet assessed
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Clinical Impact of Monoclonal Antibodies in the Treatment of High-Risk Patients with SARS-CoV-2 Breakthrough Infections: The ORCHESTRA Prospective Cohort Study ↗Biomedicines · 2022 · PMID 36140162not yet assessed
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GPR183 targets lung-resident CD301b <sup>+</sup> conventional dendritic cells type 2 to a subtissular TSLP – TSLP receptor mediated survival niche within the adventital cuff ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Informative and adaptive distances and summary statistics in sequential approximate Bayesian computation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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pyABC: Efficient and robust easy-to-use approximate Bayesian computation ↗arXiv (Cornell University) · 2022not yet assessed
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Szenarien für den Verlauf der SARS-CoV-2-Pandemie im Winter 2022/23 - Ergebnisse eines Workshops des Modellierungsnetzes für schwere Infektionskrankheiten (Modellierungsnetz) ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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Early nucleocapsid-specific T cell responses associate with control of SARS-CoV-2 in the upper airways and reduced systemic inflammation before seroconversion ↗Research Square · 2022not yet assessed
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Posterior marginalization accelerates Bayesian inference for dynamical systems ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Validation of genetic variants from NGS data using Deep Convolutional Neural Networks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Accessibility of covariance information creates vulnerability in Federated Learning frameworks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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GPR183 Targets Lung-Resident CD301b <sup>+</sup> Conventional Dendritic Cells Type 2 to a Subtissular TSLP – TSLP Receptor Mediated Survival Niche Within the Adventitial Cuff ↗SSRN Electronic Journal · 2022not yet assessed
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Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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IntestLine: a Shiny-based application to map the rolled intestinal tissue onto a line ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Supplementary Data to *Robust adaptive distance functions for approximate Bayesian inference on outlier-corrupted data* ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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Supplementary Data to *Robust adaptive distance functions for approximate Bayesian inference on outlier-corrupted data* ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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BioSimulators: a central registry of simulation engines and services for recommending specific tools ↗Nucleic Acids Research · 2022 · PMID 35524558not yet assessed
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A protocol for dynamic model calibration ↗Investigo repository of University of Vigo (University of Vigo) · 2021not yet assessed
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HER2 Expression, Test Deviations, and Their Impact on Survival in Metastatic Gastric Cancer: Results From the Prospective Multicenter VARIANZ Study ↗Journal of Clinical Oncology · 2021 · PMID 33764808not yet assessed
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COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ↗Molecular Systems Biology · 2021 · PMID 34664389not yet assessed
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PEtab—Interoperable specification of parameter estimation problems in systems biology ↗PLoS Computational Biology · 2021 · PMID 33497393not yet assessed
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Prevalence and Risk Factors of Infection in the Representative COVID-19 Cohort Munich ↗International Journal of Environmental Research and Public Health · 2021 · PMID 33808249not yet assessed
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In Search of the SARS-CoV-2 Protection Correlate: Head-to-Head Comparison of Two Quantitative S1 Assays in Pre-characterized Oligo-/Asymptomatic Patients ↗Infectious Diseases and Therapy · 2021 · PMID 34137000not yet assessed
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Alveolar macrophage transcriptomic profiling in COPD shows major lipid metabolism changes ↗ERJ Open Research · 2021 · PMID 34527724not yet assessed
-
Seroepidemiology and model-based prediction of SARS-CoV-2 in Ethiopia: longitudinal cohort study among front-line hospital workers and communities ↗The Lancet Global Health · 2021 · PMID 34678196not yet assessed
-
From first to second wave: follow-up of the prospective COVID-19 cohort (KoCo19) in Munich (Germany) ↗BMC Infectious Diseases · 2021 · PMID 34493217not yet assessed
-
Head-to-head evaluation of seven different seroassays including direct viral neutralisation in a representative cohort for SARS-CoV-2 ↗Journal of General Virology · 2021 · PMID 34623233not yet assessed
-
Benchmarking of numerical integration methods for ODE models of biological systems ↗Scientific Reports · 2021 · PMID 33514831not yet assessed
-
COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling ↗Epidemics · 2021 · PMID 33556763not yet assessed
-
Spatially resolved qualified sewage spot sampling to track SARS-CoV-2 dynamics in Munich - One year of experience ↗The Science of The Total Environment · 2021 · PMID 34346361not yet assessed
-
Cell-to-cell variability in JAK2/STAT5 pathway components and cytoplasmic volumes defines survival threshold in erythroid progenitor cells ↗Cell Reports · 2021 · PMID 34380040not yet assessed
-
HCV Spread Kinetics Reveal Varying Contributions of Transmission Modes to Infection Dynamics ↗Viruses · 2021 · PMID 34372514not yet assessed
-
Efficient gradient-based parameter estimation for dynamic models using qualitative data ↗Bioinformatics · 2021 · PMID 34260697not yet assessed
-
AMICI: high-performance sensitivity analysis for large ordinary differential equation models ↗Bioinformatics · 2021 · PMID 33821950not yet assessed
-
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) ↗Cineca Institutional Research Information System (Tor Vergata University) · 2021not yet assessed
-
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems ↗Bioinformatics · 2021 · PMID 34179955not yet assessed
-
A protocol for dynamic model calibration ↗Briefings in Bioinformatics · 2021 · PMID 34619769not yet assessed
-
yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML ↗The Journal of Open Source Software · 2021not yet assessed
-
From first to second wave: follow-up of the prospective Covid-19 cohort (KoCo19) in Munich (Germany) ↗medRxiv · 2021not yet assessed
-
Robust adaptive distance functions for approximate Bayesian inference on outlier-corrupted data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
not yet assessed
-
Efficient gradient-based parameter estimation for dynamic models using qualitative data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts ↗medRxiv · 2021not yet assessed
-
HCV spread kinetics reveal varying contributions of transmission modes to infection dynamics ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Editorial overview: ‘Mathematical modelling of high-throughput and high-content data’ ↗Current Opinion in Systems Biology · 2021not yet assessed
-
Identifiability analysis for models of the translation kinetics after mRNA transfection ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
-
Supplementary material to *Mini-batch optimization enables training of ODE models on large-scale datasets* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Silent Spread of SARS-CoV-2 in Ethiopia: Longitudinal Cohort Study Among Frontline Healthcare Workers and Community ↗SSRN Electronic Journal · 2021not yet assessed
-
Supplementary Code of the Covid19 Cohort Study KoCo19, Epi2 ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Supplementary code and models for "Silent spread of SARS-CoV-2 in Ethiopia: Longitudinal cohort study among frontline healthcare workers and community " ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
not yet assessed
-
Erratum To: COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms ↗Molecular Systems Biology · 2021 · PMID 34939300not yet assessed
-
not yet assessed
-
Supplementary Data to *Informative and adaptive distances and summary statistics in approximate Bayesian computation* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Supplementary Data to *Informative and adaptive distances and summary statistics in approximate Bayesian computation* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Supplementary Data to *Informative and adaptive distances and summary statistics in approximate Bayesian computation* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Supplementary Data to *Robust adaptive distance functions for approximate Bayesian inference on outlier-corrupted data* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Supplementary material to *Mini-batch optimization enables training of ODE models on large-scale datasets* ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
-
Domain Model Explains Propagation Dynamics and Stability of Histone H3K27 and H3K36 Methylation Landscapes ↗Cell Reports · 2020 · PMID 31995760not yet assessed
-
Protocol of a population-based prospective COVID-19 cohort study Munich, Germany (KoCo19) ↗BMC Public Health · 2020 · PMID 32605549not yet assessed
-
Efficient exact inference for dynamical systems with noisy measurements using sequential approximate Bayesian computation ↗Bioinformatics · 2020 · PMID 32657404not yet assessed
-
AsthmaMap: An interactive knowledge repository for mechanisms of asthma ↗Journal of Allergy and Clinical Immunology · 2020 · PMID 33309742not yet assessed
-
Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach ↗Journal of Mathematical Biology · 2020 · PMID 32696085not yet assessed
-
Determining the effects of trastuzumab, cetuximab and afatinib by phosphoprotein, gene expression and phenotypic analysis in gastric cancer cell lines ↗BMC Cancer · 2020 · PMID 33115415not yet assessed
-
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines ↗PLoS Computational Biology · 2020 · PMID 32119655not yet assessed
-
Closing the gap between formats for storing layout information in systems biology ↗Briefings in Bioinformatics · 2020not yet assessed
-
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms ↗Scientific Data · 2020 · PMID 32371892not yet assessed
-
Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Prevalence and Risk Factors of Infection in the Representative COVID-19 Cohort Munich ↗SSRN Electronic Journal · 2020not yet assessed
-
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms ↗Scientific Data · 2020 · PMID 32678106not yet assessed
-
Benchmarking of numerical integration methods for ODE models of biological systems ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Publisher Correction to: Protocol of a population-based prospective COVID-19 cohort study Munich, Germany (KoCo19) ↗BMC Public Health · 2020 · PMID 32873261not yet assessed
-
COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modelling ↗medRxiv · 2020not yet assessed
-
Efficient Exact Inference for Dynamical Systems with Noisy Measurements using Sequential Approximate Bayesian Computation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
-
Abstract PHB04: Predictive modeling, applied to genetically engineered mouse models of breast or lung cancer, provides insights into major oncogenic pathways ↗Cancer Research · 2020not yet assessed
-
Supplementary data to *Benchmarking of numerical integration methods for ODE models of biological systems* ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Supplementary Code to the Covid-19 Munich Cohort Study KoCo19, Lab+Epi ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
not yet assessed
-
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems ↗INRIA a CCSD electronic archive server · 2020not yet assessed
-
Supplementary data to *Benchmarking of numerical integration methods for ODE models of biological systems* ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Supplementary data to *Benchmarking of numerical integration methods for ODE models of biological systems* ↗Zenodo (CERN European Organization for Nuclear Research) · 2020not yet assessed
-
Inferring population dynamics from single-cell RNA-sequencing time series data ↗Nature Biotechnology · 2019 · PMID 30936567not yet assessed
-
Benchmark problems for dynamic modeling of intracellular processes ↗Bioinformatics · 2019 · PMID 30624608not yet assessed
-
Efficient parameterization of large-scale dynamic models based on relative measurements ↗Bioinformatics · 2019 · PMID 31347657not yet assessed
-
Closing the gap between formats for storing layout information in systems biology ↗Briefings in Bioinformatics · 2019 · PMID 31273380not yet assessed
-
Comparison of null models for combination drug therapy reveals Hand model as biochemically most plausible ↗Scientific Reports · 2019 · PMID 30816136not yet assessed
-
A Comparison of Methods for Quantifying Prediction Uncertainty in Systems Biology ↗IFAC-PapersOnLine · 2019not yet assessed
-
Dirac mixture distributions for the approximation of mixed effects models ↗IFAC-PapersOnLine · 2019not yet assessed
-
Challenges in the calibration of large-scale ordinary differential equation models ↗IFAC-PapersOnLine · 2019not yet assessed
-
Efficient computation of steady states in large-scale ODE models of biochemical reaction networks ↗IFAC-PapersOnLine · 2019not yet assessed
-
Inference of finite mixture models and the effect of binning ↗Statistical Applications in Genetics and Molecular Biology · 2019 · PMID 31348764not yet assessed
-
Mathematical modeling of variability in intracellular signaling ↗Current Opinion in Systems Biology · 2019not yet assessed
-
Robust calibration of hierarchical population models for heterogeneous cell populations ↗Journal of Theoretical Biology · 2019 · PMID 31866394not yet assessed
-
Efficient parameterization of large-scale dynamic models based on relative measurements ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Publisher Correction: Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection ↗npj Systems Biology and Applications · 2019 · PMID 30854226not yet assessed
-
Challenges in the calibration of large-scale ordinary differential equation models ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Dirac mixture distributions for the approximation of mixed effects models <sup>⋆</sup> ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Statistical inference of mechanistic models from qualitative data using an efficient optimal scaling approach ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Mini-batch optimization enables training of ODE models on large-scale datasets ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Domain model explains propagation dynamics and stability of K27 and K36 methylation landscapes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Cell-to-cell variability in JAK2/STAT5 pathway components and cytoplasmic volumes define survival threshold in erythroid progenitor cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Supplementary material to *Mini-batch optimization enables training of ODE models on large-scale datasets* ↗Figshare · 2019not yet assessed
-
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Robust calibration of hierarchical population models for heterogeneous cell populations ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
-
Supplementary data to Schmiester et al. *Efficient parameterization of large-scale dynamic models based on relative measurements* ↗Figshare · 2019not yet assessed
-
not yet assessed
-
Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines ↗Zenodo (CERN European Organization for Nuclear Research) · 2019not yet assessed
-
Supplementary data to Schmiester et al. *Efficient parameterization of large-scale dynamic models based on relative measurements* ↗Zenodo (CERN European Organization for Nuclear Research) · 2019not yet assessed
-
Supplementary data to Schmiester et al. *Efficient parameterization of large-scale dynamic models based on relative measurements* ↗Zenodo (CERN European Organization for Nuclear Research) · 2019not yet assessed
-
Benchmarking optimization methods for parameter estimation in large kinetic models ↗Bioinformatics · 2018 · PMID 30816929not yet assessed
-
Efficient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model ↗Cell Systems · 2018 · PMID 30503647not yet assessed
-
pyABC: distributed, likelihood-free inference ↗Bioinformatics · 2018 · PMID 29762723not yet assessed
-
Community-driven roadmap for integrated disease maps ↗Briefings in Bioinformatics · 2018 · PMID 29688273not yet assessed
-
Whither systems medicine? ↗Experimental & Molecular Medicine · 2018 · PMID 29497170not yet assessed
-
PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination ↗The Journal of Cell Biology · 2018 · PMID 29615473not yet assessed
-
A Hierarchical, Data-Driven Approach to Modeling Single-Cell Populations Predicts Latent Causes of Cell-To-Cell Variability ↗Cell Systems · 2018 · PMID 29730254not yet assessed
-
Increasing Neural Stem Cell Division Asymmetry and Quiescence Are Predicted to Contribute to the Age-Related Decline in Neurogenesis ↗Cell Reports · 2018 · PMID 30566852not yet assessed
-
Hierarchical optimization for the efficient parametrization of ODE models ↗Bioinformatics · 2018 · PMID 30010716not yet assessed
-
Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection ↗npj Systems Biology and Applications · 2018 · PMID 30564456not yet assessed
-
Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis ↗Bioinformatics · 2018 · PMID 29949990not yet assessed
-
Effects of trastuzumab and afatinib on kinase activity in gastric cancer cell lines ↗Molecular Oncology · 2018 · PMID 29325228not yet assessed
-
Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology ↗IFAC-PapersOnLine · 2018not yet assessed
-
Bayesian parameter estimation for biochemical reaction networks using region-based adaptive parallel tempering ↗Bioinformatics · 2018 · PMID 29949983not yet assessed
-
Scalable Inference of Ordinary Differential Equation Models of Biochemical Processes ↗Methods in molecular biology · 2018 · PMID 30547409not yet assessed
-
Mechanistic description of spatial processes using integrative modelling of noise-corrupted imaging data ↗Journal of The Royal Society Interface · 2018 · PMID 30958238not yet assessed
-
Continuous analogue to iterative optimization for PDE-constrained inverse problems ↗Inverse Problems in Science and Engineering · 2018 · PMID 31057658not yet assessed
-
LNA++: Linear Noise Approximation with First and Second Order Sensitivities ↗Lecture notes in computer science · 2018not yet assessed
-
Benchmarking optimization methods for parameter estimation in large kinetic models ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Multi-Experiment Nonlinear Mixed Effect Modeling of Single-Cell Translation Kinetics after Transfection ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
not yet assessed
-
Benchmark Problems for Dynamic Modeling of Intracellular Processes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Optimization and uncertainty analysis of ODE models using 2nd order adjoint sensitivity analysis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
not yet assessed
-
Comparison of null models for combination drug therapy reveals Hand model as biochemically most plausible ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
Mechanistic description of spatial processes using integrative modelling of noise-corrupted imaging data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
PO-175 Effects of trastuzumab and afatinib on kinase activity in gastric cancer cell lines ↗ESMO Open · 2018not yet assessed
-
Abstract 1296: CanPathPro—development of a platform for predictive pathway modelling using genetically engineered mouse models ↗Cancer Research · 2018not yet assessed
-
Supplementary material from "Mechanistic description of spatial processes using integrative modelling of noise-corrupted imaging data" ↗Figshare · 2018not yet assessed
-
Hierarchical optimization for the efficient parametrization of ODE models ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
-
MATLAB code; Supplemental notes from Mechanistic description of spatial processes using integrative modelling of noise-corrupted imaging data ↗Figshare · 2018not yet assessed
-
ICB-DCM/PESTO: 1.1.0 ↗Zenodo (CERN European Organization for Nuclear Research) · 2018not yet assessed
-
not yet assessed
-
Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks ↗PLoS Computational Biology · 2017 · PMID 28114351not yet assessed
-
GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models ↗Bioinformatics · 2017 · PMID 29206901not yet assessed
-
PESTO: Parameter EStimation TOolbox ↗Bioinformatics · 2017 · PMID 29069312not yet assessed
-
Parallelization and High-Performance Computing Enables Automated Statistical Inference of Multi-scale Models ↗Cell Systems · 2017 · PMID 28089542not yet assessed
-
Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems ↗BMC Systems Biology · 2017 · PMID 28646868not yet assessed
-
Evaluation of epidermal growth factor receptor signaling effects in gastric cancer cell lines by detailed motility-focused phenotypic characterization linked with molecular analysis ↗BMC Cancer · 2017 · PMID 29237412not yet assessed
-
A Scheme for Adaptive Selection of Population Sizes in Approximate Bayesian Computation - Sequential Monte Carlo ↗Lecture notes in computer science · 2017not yet assessed
-
A scalable moment-closure approximation for large-scale biochemical reaction networks ↗Bioinformatics · 2017 · PMID 28881983not yet assessed
-
pyABC: distributed, likelihood-free inference ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Efficient parameterization of large-scale mechanistic models enables drug response prediction for cancer cell lines ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Beyond pseudotime: Following T-cell maturation in single-cell RNAseq time series ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Mechanistic hierarchical population model identifies latent causes of cell-to-cell variability ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Scalable Inference of Ordinary Differential Equation Models of\n Biochemical Processes ↗arXiv (Cornell University) · 2017not yet assessed
-
Subtle Changes in Clonal Dynamics Underlie the Age-Related Decline in Neurogenesis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Experimental Data Used In The Manuscript (Jagiella Et Al., Cell Systems, 4(2), 2017) ↗Zenodo (CERN European Organization for Nuclear Research) · 2017not yet assessed
-
Experimental Data Used In The Manuscript (Jagiella Et Al., Cell Systems, 4(2), 2017) ↗Zenodo (CERN European Organization for Nuclear Research) · 2017not yet assessed
-
Additional file 2 of Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems ↗Figshare · 2017not yet assessed
-
Characterization of Rare, Dormant, and Therapy-Resistant Cells in Acute Lymphoblastic Leukemia ↗Cancer Cell · 2016 · PMID 27916615not yet assessed
-
Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion ↗PLoS Computational Biology · 2016 · PMID 27447730not yet assessed
-
Robust parameter estimation for dynamical systems from outlier-corrupted data ↗Bioinformatics · 2016 · PMID 28062444not yet assessed
-
CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics ↗PLoS ONE · 2016 · PMID 26807911not yet assessed
-
Parameter estimation for dynamical systems with discrete events and logical operations ↗Bioinformatics · 2016 · PMID 28040696not yet assessed
-
Analysis of CFSE time-series data using division-, age- and label-structured population models ↗Bioinformatics · 2016 · PMID 27153577not yet assessed
-
Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints ↗BMC Systems Biology · 2016 · PMID 27549154not yet assessed
-
Combinatorial Histone Acetylation Patterns Are Generated by Motif-Specific Reactions ↗Cell Systems · 2016 · PMID 27136689not yet assessed
-
MEMO: multi-experiment mixture model analysis of censored data ↗Bioinformatics · 2016 · PMID 27153627not yet assessed
-
Parameter Estimation for Reaction Rate Equation Constrained Mixture Models ↗Lecture notes in computer science · 2016not yet assessed
-
Quantitative comparison of competing PDE models for Pomlp dynamics in fission yeast * *The authors acknowledge financial support from the Postdoctoral Fellowship Program (PFP) of the Helmholtz Zentrum Munchen. ↗IFAC-PapersOnLine · 2016not yet assessed
-
Large-scale modeling of cancer signaling: Mechanistic modeling meets Big Data ↗European Journal of Cancer · 2016not yet assessed
-
Scalable parameter estimation for genome-scale biochemical reaction networks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
-
Identification of predictive response and resistance factors to targeted therapy in gastric cancer using a systems medicine approach ↗European Journal of Cancer · 2016not yet assessed
-
Additional file 2 of Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints ↗Figshare · 2016not yet assessed
-
Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems ↗Bioinformatics · 2015 · PMID 26142188not yet assessed
-
Network plasticity of pluripotency transcription factors in embryonic stem cells ↗Nature Cell Biology · 2015 · PMID 26389663not yet assessed
-
An adaptive scheduling scheme for calculating Bayes factors with thermodynamic integration using Simpson’s rule ↗Statistics and Computing · 2015not yet assessed
-
Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse Data Using Multivariate Test Statistics ↗Lecture notes in computer science · 2015not yet assessed
-
Data-Driven Modelling of Biological Multi-Scale Processes ↗Journal of Coupled Systems and Multiscale Dynamics · 2015not yet assessed
-
A simulation-based approach for solving optimisation problems with ODE-type steady state constraints ↗arXiv (Cornell University) · 2015not yet assessed
-
<I>A Special Issue on</I> analysis of coupled/multi-scale biological systems ↗Journal of Coupled Systems and Multiscale Dynamics · 2015not yet assessed
-
Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More ↗Lecture notes in computer science · 2014not yet assessed
-
ODE Constrained Mixture Modelling: A Method for Unraveling Subpopulation Structures and Dynamics ↗PLoS Computational Biology · 2014 · PMID 24992156not yet assessed
-
Dominant Negative Effects of Tumor Necrosis Factor (TNF)-related Apoptosis-inducing Ligand (TRAIL) Receptor 4 on TRAIL Receptor 1 Signaling by Formation of Heteromeric Complexes ↗Journal of Biological Chemistry · 2014 · PMID 24764293not yet assessed
-
Model predictive control using reduced order models: Guaranteed stability for constrained linear systems ↗Journal of Process Control · 2014not yet assessed
-
Modeling of stochastic biological processes with non-polynomial propensities using non-central conditional moment equation ↗IFAC Proceedings Volumes · 2014not yet assessed
-
Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis ↗Lecture notes in computer science · 2014not yet assessed
-
Unraveling subpopulation structures and dynamics with ODE constrained mixture modelingEuropean Conference on Mathematical and Theoretical Biology · 2014not yet assessed
-
Determinants of robustness in spindle assembly checkpoint signalling ↗Nature Cell Biology · 2013 · PMID 24161933not yet assessed
-
Method of conditional moments (MCM) for the Chemical Master Equation ↗Journal of Mathematical Biology · 2013 · PMID 23918091not yet assessed
-
High-dimensional Bayesian parameter estimation: Case study for a model of JAK2/STAT5 signaling ↗Mathematical Biosciences · 2013 · PMID 23602931not yet assessed
-
Pain modulators regulate the dynamics of PKA-RII phosphorylation in subgroups of sensory neurons ↗Journal of Cell Science · 2013 · PMID 24190886not yet assessed
-
Wound-healing growth factor, basic FGF, induces Erk1/2-dependent mechanical hyperalgesia ↗Pain · 2013 · PMID 23867734not yet assessed
-
Modeling of 2D diffusion processes based on microscopy data: parameter estimation and practical identifiability analysis ↗BMC Bioinformatics · 2013 · PMID 24267545not yet assessed
-
Sharpening of expression domains induced by transcription and microRNA regulationwithin a spatio-temporal model of mid-hindbrain boundary formation ↗BMC Systems Biology · 2013 · PMID 23799959not yet assessed
-
iVUN: interactive Visualization of Uncertain biochemical reaction Networks ↗BMC Bioinformatics · 2013 · PMID 24564335not yet assessed
-
not yet assessed
-
Modeling and parameter estimation for heterogeneous cell populations ↗OPUS Publication Server of the University of Stuttgart (University of Stuttgart) · 2013not yet assessed
-
Parameter estimation for stochastic biochemical processes: A comparison of moment equation and fintie state projectionSite cant be reached · 2013not yet assessed
-
Feasibility ↗2013not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
not yet assessed
-
Analysis and Simulation of Division- and Label-Structured Population Models ↗Bulletin of Mathematical Biology · 2012 · PMID 23086287not yet assessed
-
A visual analytics approach for models of heterogeneous cell populations ↗EURASIP Journal on Bioinformatics and Systems Biology · 2012 · PMID 22651376not yet assessed
-
not yet assessed
-
Dynamical optimization using reduced order models: A method to guarantee performance ↗Journal of Process Control · 2012not yet assessed
-
Threshold-Free Population Analysis Identifies Larger DRG Neurons to Respond Stronger to NGF Stimulation ↗PLoS ONE · 2012 · PMID 22479579not yet assessed
-
Set based uncertainty analysis and parameter estimation of biological networks with the bioSDP toolboxLirias · 2012not yet assessed
-
A computational model for proliferation dynamics of division- and label-structured populations ↗arXiv (Cornell University) · 2012not yet assessed
-
Identification of models of heterogeneous cell populations from population snapshot data ↗BMC Bioinformatics · 2011 · PMID 21527025not yet assessed
-
Analysis of heterogeneous cell populations: A density-based modeling and identification framework ↗Journal of Process Control · 2011not yet assessed
-
Parameter Estimation and Identifiability of Biological Networks Using Relative Data ↗IFAC Proceedings Volumes · 2011not yet assessed
-
Trajectory-based model reduction of nonlinear biochemical networks employing the observability normal form ↗IFAC Proceedings Volumes · 2011not yet assessed
-
Steady state stability preserving nonlinear model reduction using sequential convex optimization ↗2011not yet assessed
-
Visualization methods and support vector machines as tools for determining markers in models of heterogeneous populations: Proapoptotic signaling as a case study2011not yet assessed
-
Parameter identification, experimental design and model falsification for biological network models using semidefinite programming ↗IET Systems Biology · 2010 · PMID 20232992not yet assessed
-
Cell differentiation modeled via a coupled two-switch regulatory network ↗Chaos An Interdisciplinary Journal of Nonlinear Science · 2010 · PMID 21198133not yet assessed
-
Guaranteed steady state bounds for uncertain (bio-)chemical processes using infeasibility certificates ↗Journal of Process Control · 2010not yet assessed
-
not yet assessed
-
A maximum likelihood estimator for parameter distributions in heterogeneous cell populations ↗Procedia Computer Science · 2010not yet assessed
-
Density-based modeling and identification of biochemical networks in cell populations ↗IFAC Proceedings Volumes · 2010not yet assessed
-
not yet assessed
-
Global Uncertainty Analysis for a Model of TNF-Induced NF-κB Signalling ↗Lecture notes in control and information sciences · 2010not yet assessed
-
Density-based modeling and identification of biochemical networks in cell populations ↗arXiv (Cornell University) · 2010not yet assessed
-
Estimation of biochemical network parameter distributions in cell populations ↗IFAC Proceedings Volumes · 2009not yet assessed
-
Guaranteed Steady-State Bounds for Uncertain Chemical Processes ↗IFAC Proceedings Volumes · 2009not yet assessed
-
Estimation of biochemical network parameter distributions in cell populations ↗arXiv (Cornell University) · 2009not yet assessed
-
Allosteric regulation of the access channels to the Rb+ occlusion sites of (Na+ + K+)-ATPase. ↗Journal of Biological Chemistry · 1993 · PMID 8381424not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Hasenauer J” paper on PubMed ↗