Antonis Giannakakis

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (2)

• ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
  2026 L1 73/100 ⚑
• Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications.
  2025 L1 83/100

2 assessed by us (1 reproduced) · 53 not yet assessed — every PubMed paper on record, linked below.

• Rebuttal letter to “The need for functional correlation in assessing peripheral and CNS immunity during EBV reactivation” ↗

  Journal of Neuroimmunology · 2026 · PMID 41702142
  not yet assessed
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  Bioinformatics Advances · 2026
  not yet assessed
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Epstein-Barr virus reactivation is associated with altered immune cell profiles in peripheral blood and cerebrospinal fluid of treatment-naive multiple sclerosis patients ↗

  Journal of Neuroimmunology · 2025 · PMID 41005209
  not yet assessed
• ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines⚑

  Nucleic Acids Research · 2025 · PMID 41263110
  L1 73/100 ⚑
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Bioinformatics · 2025 · PMID 39921901
  not yet assessed
• Double-stranded RNA antiviral signature in early multiple sclerosis ↗

  Frontiers in Microbiology · 2025 · PMID 41395469
  not yet assessed
• Darling (v2.0): Mining disease-related databases for the detection of biomedical entity associations ↗

  Computational and Structural Biotechnology Journal · 2025 · PMID 40599243
  not yet assessed
• Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications

  Computational and Structural Biotechnology Journal · 2025 · PMID 41282419
  L1 83/100
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• D-sORF: Accurate Ab Initio Classification of Experimentally Detected Small Open Reading Frames (sORFs) Associated with Translational Machinery ↗

  Biology · 2024 · PMID 39194501
  not yet assessed
• KDM7A-DT induces genotoxic stress, tumorigenesis, and progression of p53 missense mutation-associated invasive breast cancer ↗

  Frontiers in Oncology · 2024 · PMID 38756663
  not yet assessed
• Fingerprinting Breast Milk; insights into Milk Exosomics ↗

  EMBnet journal · 2024 · PMID 38845752
  not yet assessed
• Analysis of Human Milk Microbiota in Northern Greece by Comparative 16S rRNA Sequencing vs. Local Dairy Animals ↗

  Nutrients · 2024 · PMID 39064618
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Comparative Immunoprofiling of Peripheral Blood and Cerebrospinal Fluid in a Hellenic Cohort of Multiple Sclerosis Patients ↗

  SSRN Electronic Journal · 2024
  not yet assessed
• Virus-Derived Small RNAs and microRNAs in Health and Disease ↗

  Annual Review of Biomedical Data Science · 2023 · PMID 37159873
  not yet assessed
• Expression and purification of human interferon alpha 2a (IFNα2a) in the methylotrophic yeast Pichia pastoris ↗

  Protein Expression and Purification · 2023 · PMID 37467825
  not yet assessed
• A Multiplex PCR Melting-Curve-Analysis-Based Detection Method for the Discrimination of Five Aspergillus Species ↗

  Journal of Fungi · 2023 · PMID 37623613
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2023
  not yet assessed
• TP53 mutation–associated and copy number–dependent KDM7A-DT expression affects DNA repair and promotes invasive breast cancer progression ↗

  Research Square · 2022
  not yet assessed
• TP53 mutation–associated and copy number–dependent KDM7A-DT expression affects DNA repair and promotes invasive breast cancer progression ↗

  Research Square · 2022
  not yet assessed
• TP53mutation–associated and copy number–dependent KDM7A-DT expression affects DNA repair and promotes invasive breast cancer progression ↗

  Research Square · 2022
  not yet assessed
• lncRNA <i>NORAD</i> is consistently detected in breastmilk exosomes and its expression is downregulated in mothers of preterm infants ↗

  International Journal of Molecular Medicine · 2021 · PMID 34651660
  not yet assessed
• An updated evolutionary study of the nuclear receptor protein family ↗

  World Academy of Sciences Journal · 2021
  not yet assessed
• Raw data Exosomes breast milk ; Mourtzi_et_al,2021 ↗

  Figshare · 2021
  not yet assessed
• Raw data Exosomes breast milk ; Mourtzi_et_al,2021 ↗

  Figshare · 2021
  not yet assessed
• Functions, pathophysiology and current insights of exosomal endocrinology (Review) ↗

  Molecular Medicine Reports · 2020 · PMID 33179094
  not yet assessed
• Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction ↗

  Atherosclerosis · 2018 · PMID 29395098
  not yet assessed
• Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients ↗

  Data in Brief · 2018 · PMID 29876469
  not yet assessed
• Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress ↗

  Scientific Reports · 2015 · PMID 26024509
  not yet assessed
• Overexpression of<i>GPC6</i>and<i>TMEM132D</i>in Early Stage Ovarian Cancer Correlates with CD8+ T-Lymphocyte Infiltration and Increased Patient Survival ↗

  BioMed Research International · 2015 · PMID 26448945
  not yet assessed
• Overexpression of SMARCE1 is associated with CD8+ T-cell infiltration in early stage ovarian cancer ↗

  The International Journal of Biochemistry & Cell Biology · 2014 · PMID 24880093
  not yet assessed
• P180 UPREGULATION OF CHROMATIN MODIFYING GENES IN EXHAUSTED T CELLS FROM CHRONIC HBV PATIENTS ↗

  Journal of Hepatology · 2014
  not yet assessed
• miR-Sens—a retroviral dual-luciferase reporter to detect microRNA activity in primary cells ↗

  RNA · 2012 · PMID 22417692
  not yet assessed
• Biochemical and molecular analysis of the interaction between ERK2 MAP kinase and hypoxia inducible factor-1α ↗

  The International Journal of Biochemistry & Cell Biology · 2011 · PMID 21807114
  not yet assessed
• Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer ↗

  Proceedings of the National Academy of Sciences · 2008 · PMID 18458333
  not yet assessed
• Reactive oxygen species and HIF-1 signalling in cancer ↗

  Cancer Letters · 2008 · PMID 18378391
  not yet assessed
• Transcriptional Regulation of PIK3CA Oncogene by NF-κB in Ovarian Cancer Microenvironment ↗

  PLoS ONE · 2008 · PMID 18335034
  not yet assessed
• miR-210 links hypoxia with cell cycle regulation and is deleted in human epithelial ovarian cancer ↗

  Cancer Biology & Therapy · 2008 · PMID 18059191
  not yet assessed
• miRNome integrative analysis in ovarian cancer

  Clinical Cancer Research · 2008
  not yet assessed
• Integrative Genomic Analysis of Phosphatidylinositol 3′-Kinase Family Identifies <i>PIK3R3</i> as a Potential Therapeutic Target in Epithelial Ovarian Cancer ↗

  Clinical Cancer Research · 2007 · PMID 17875760
  not yet assessed
• miRNA genetic alterations in human cancers ↗

  Expert Opinion on Biological Therapy · 2007 · PMID 17727327
  not yet assessed
• MICRORNAS EXHIBIT HIGH FREQUENCY GENO-MIC ALTERATIONS IN HUMAN OVARIAN CANCER ↗

  Biology of Reproduction · 2007
  not yet assessed
• microRNAs exhibit high frequency genomic alterations in human cancer ↗

  Proceedings of the National Academy of Sciences · 2006 · PMID 16754881
  not yet assessed
• Integrative Genomic Analysis of Protein Kinase C (PKC) Family Identifies PKCι as a Biomarker and Potential Oncogene in Ovarian Carcinoma ↗

  Cancer Research · 2006 · PMID 16651413
  not yet assessed
• 1292 Human hepatic myofibroblasts produce chemokines and adhesion molecules which promote the retention of lymphocytes during liver injury and fibrosis ↗

  Hepatology · 2003
  not yet assessed
• [Mesenteric panniculitis of the sigmoid. A case report and review of the literature]. ↗

  PubMed · 1990 · PMID 2097568
  not yet assessed