Lorena Pantano

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Viewing RNA-seq data on the entire human genome.
  2017 L1 50/100

1 assessed by us (0 reproduced) · 97 not yet assessed — every PubMed paper on record, linked below.

• Aging-related Transcriptomic Changes with Spatial Resolution in the Human Prefrontal Cortex ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 41648412
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.23.0 - Gallium Gecko ↗

  Open MIND · 2026
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.24.0 - Selenium Seahorse ↗

  Open MIND · 2026
  not yet assessed
• nf-core/smrnaseq: v2.4.1 - 2026-01-07 - Navy Iron Boxer Patch ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Daratumumab in high-risk MGUS and low-risk smoldering myeloma: results of the Phase II D-PRISM study ↗

  Nature Communications · 2026 · PMID 41951609
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.25.0 - Plutonium Pangolin ↗

  Open MIND · 2026
  not yet assessed
• nf-core/bacass: nf-core/bacass v2.6.0 - Crimson Titanium Seahorse ↗

  Open MIND · 2026
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.26.0 - Chromium Cuttlefish ↗

  Open MIND · 2026
  not yet assessed
• ADAMTS14 is a Novel Modulator of Fibroblast Mechanoactivation in Pulmonary Fibrosis ↗

  American Journal of Respiratory and Critical Care Medicine · 2026 · PMID 42518202
  not yet assessed
• Screening the human druggable genome identifies ABHD17B as an anti-fibrotic target in hepatic stellate cells ↗

  Nature Communications · 2025 · PMID 40025044
  not yet assessed
• Single-cell immune profiling reveals enhanced immune fitness of endogenous and engineered T cells in patients with high-risk smoldering myeloma compared to Relapsed/Refractory myeloma following bispecific antibodies or CAR-T cell therapies. ↗

  Blood · 2025
  not yet assessed
• Queer voices in computational biology: the first ISCB LGBTQI+ Symposium ↗

  Bioinformatics Advances · 2024 · PMID 39927293
  not yet assessed
• Role of the Metallopeptidase ADAMTS14 in Mechanoactivation of Primary Human Lung Fibroblasts ↗

  2024
  not yet assessed
• Design and testing of a humanized porcine donor for xenotransplantation ↗

  Nature · 2023 · PMID 37821590
  not yet assessed
• Multiomics of Tissue Extracellular Vesicles Identifies Unique Modulators of Atherosclerosis and Calcific Aortic Valve Stenosis ↗

  Circulation · 2023 · PMID 37427430
  not yet assessed
• Screening the human druggable genome identifies ABHD17B as an anti-fibrotic target in hepatic stellate cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Screening for Inhibitors of YAP Nuclear Localization Identifies Aurora Kinase A as a Modulator of Lung Fibrosis ↗

  American Journal of Respiratory Cell and Molecular Biology · 2022 · PMID 35377835
  not yet assessed
• Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells ↗

  eLife · 2022 · PMID 35617485
  not yet assessed
• Author response: Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells ↗

  2022
  not yet assessed
• Molecular characterization and cell type composition deconvolution of fibrosis in NAFLD ↗

  Scientific Reports · 2021 · PMID 34508113
  not yet assessed
• Plasma MicroRNA Profiling of <i>Plasmodium falciparum</i> Biomass and Association with Severity of Malaria Disease ↗

  Emerging infectious diseases · 2021 · PMID 33496227
  not yet assessed
• Huntington’s disease brain-derived small RNAs recapitulate associated neuropathology in mice ↗

  Acta Neuropathologica · 2021 · PMID 33547932
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.4 - Aluminium Aardvark ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.1 - Lead Alligator ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• bcbio/bcbio-nextgen: v1.2.7 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• Nanchangmycin regulates FYN, FAK and ERK to control the fibrotic activity of hepatic stellate cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.3 - Bronze Bear ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.2 - Copper Flamingo ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• HDAC1 modulates OGG1-initiated oxidative DNA damage repair in the aging brain and Alzheimer’s disease ↗

  Nature Communications · 2020 · PMID 32424276
  not yet assessed
• Targeting acid ceramidase inhibits YAP/TAZ signaling to reduce fibrosis in mice ↗

  Science Translational Medicine · 2020 · PMID 32817366
  not yet assessed
• Screening for YAP Inhibitors Identifies Statins as Modulators of Fibrosis ↗

  American Journal of Respiratory Cell and Molecular Biology · 2020 · PMID 31944822
  not yet assessed
• COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis ↗

  Scientific Reports · 2020 · PMID 32165660
  not yet assessed
• Cross-Site Evaluation of Commercial Sanger Sequencing Chemistries ↗

  Journal of Biomolecular Techniques JBT · 2020 · PMID 32831655
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v3.0 - Silver Shark ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2020
  not yet assessed
• Conserved and Divergent Modulation of Calcification in Atherosclerosis and Aortic Valve Disease by Tissue Extracellular Vesicles ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• bcbio/bcbio-nextgen: v1.2.3 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2020
  not yet assessed
• bcbio/bcbio-nextgen: v1.2.4 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2020
  not yet assessed
• Plasma microRNA profiling for malaria disease: association with severity and <i>P. falciparum</i> biomass ↗

  medRxiv · 2020
  not yet assessed
• nf-core/rnaseq: nf-core/rnaseq v2.0 - Titanium Tiger ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2020
  not yet assessed
• bcbio/bcbio-nextgen: v1.2.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2020
  not yet assessed
• Evolutionary and functional impact of common polymorphic inversions in the human genome ↗

  Nature Communications · 2019 · PMID 31530810
  not yet assessed
• Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API ↗

  Bioinformatics · 2019 · PMID 31504201
  not yet assessed
• A High-Throughput Screening Identifies MicroRNA Inhibitors That Influence Neuronal Maintenance and/or Response to Oxidative Stress ↗

  Molecular Therapy — Nucleic Acids · 2019 · PMID 31302497
  not yet assessed
• Sex-Dependent Changes in miRNA Expression in the Bed Nucleus of the Stria Terminalis Following Stress ↗

  Frontiers in Molecular Neuroscience · 2019 · PMID 31636537
  not yet assessed
• Sex Differences in Adrenal Bmal1 Deletion–Induced Augmentation of Glucocorticoid Responses to Stress and ACTH in Mice ↗

  Endocrinology · 2019 · PMID 31398249
  not yet assessed
• Visualization of the small RNA transcriptome using seqclusterViz ↗

  F1000Research · 2019 · PMID 30984380
  not yet assessed
• Single-cell cloning of human T-cell lines reveals clonal variation in cell death responses to chemotherapeutics ↗

  Cancer Genetics · 2019 · PMID 31447068
  not yet assessed
• Visualization of the small RNA transcriptome using seqclusterViz ↗

  F1000Research · 2019
  not yet assessed
• Supporting Single Cell RNA-seq Analysis at Harvard - A Community Approach

  Europe PMC (PubMed Central) · 2019
  not yet assessed
• Multi omics analysis of fibrotic kidneys in two mouse models ↗

  Scientific Data · 2019 · PMID 31201317
  not yet assessed
• bcbio/bcbio-nextgen: v1.1.9 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2019
  not yet assessed
• hbc/MouseKidneyFibrOmics: v1.0 ↗

  Figshare · 2019
  not yet assessed
• SIAM CSE 2019 Minisymposterium: The Journal of Open Source Software ↗

  INDIGO (University of Illinois at Chicago) · 2019
  not yet assessed
• A High-Throughput Small Molecule Screen for YAP Inhibitors Identifies Statins as Inhibitors of Fibroblast Activation and Pulmonary Fibrosis ↗

  2019
  not yet assessed
• Cross Site Evaluation of Sanger Sequencing Dye Chemistries

  Europe PMC (PubMed Central) · 2019
  not yet assessed
• roryk/ipython-cluster-helper: v0.6.4 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2019
  not yet assessed
• ewels/MultiQC: MultiQC Version 1.8 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2019
  not yet assessed
• The circulating metabolome of human starvation ↗

  JCI Insight · 2018 · PMID 30135314
  not yet assessed
• Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk ↗

  PLoS ONE · 2018 · PMID 29505615
  not yet assessed
• bcbioRNASeq: R package for bcbio RNA-seq analysis ↗

  F1000Research · 2018
  not yet assessed
• Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Functional and evolutionary impact of polymorphic inversions in the human genome ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• ewels/MultiQC: MultiQC Version 1.6 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2018
  not yet assessed
• ewels/MultiQC: MultiQC Version 1.4 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2018
  not yet assessed
• Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans ↗

  npj Genomic Medicine · 2017 · PMID 29263828
  not yet assessed
• Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140 ↗

  Science Immunology · 2017 · PMID 28783698
  not yet assessed
• Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution ↗

  RNA Biology · 2017 · PMID 28945502
  not yet assessed
• bcbioRNASeq: R package for bcbio RNA-seq analysis ↗

  F1000Research · 2017
  not yet assessed
• Viewing RNA-seq data on the entire human genome

  F1000Research · 2017 · PMID 28979763
  L1 50/100
• Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives ↗

  Scientific Data · 2017 · PMID 28350385
  not yet assessed
• Bioconda: A sustainable and comprehensive software distribution for the life sciences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• scientificomputing/Montage v1.4 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2017
  not yet assessed
• hbc/bcbioRNASeq: bcbioRNASeq 0.1.3 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2017
  not yet assessed
• Comparative analysis of LIN28-RNA binding sites identified at single nucleotide resolution ↗

  INDIGO (University of Illinois at Chicago) · 2017
  not yet assessed
• Visualization of the small RNA transcriptome using seqclusterViz ↗

  Faculty of 1000 Research Ltd · 2017
  not yet assessed
• Genomic analyses identify molecular subtypes of pancreatic cancer ↗

  Nature · 2016 · PMID 26909576
  not yet assessed
• miRTOP.github.io: Basic structure for home page ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2016
  not yet assessed
• bcbio.rnaseq v1.1.1 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2016
  not yet assessed
• isomiRs v0.99.12 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2016
  not yet assessed
• The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes ↗

  RNA · 2015 · PMID 25904136
  not yet assessed
• Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson’s disease revealed by deep sequencing analysis ↗

  Bioinformatics · 2015 · PMID 26530722
  not yet assessed
• Functional Impact and Evolution of a Novel Human Polymorphic Inversion That Disrupts a Gene and Creates a Fusion Transcript ↗

  PLoS Genetics · 2015 · PMID 26427027
  not yet assessed
• bcbio.rnaseq v1.0.4 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2015
  not yet assessed
• bcbio.rnaseq: v1.0.3 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2015
  not yet assessed
• bcbio.rnaseq: v1.0.2 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2015
  not yet assessed
• Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity ↗

  Cell · 2014 · PMID 25480298
  not yet assessed
• A highly expressed miR-101 isomiR is a functional silencing small RNA ↗

  BMC Genomics · 2013 · PMID 23414127
  not yet assessed
• InvFEST, a database integrating information of polymorphic inversions in the human genome ↗

  Nucleic Acids Research · 2013 · PMID 24253300
  not yet assessed
• Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor ↗

  BMC Genomics · 2013 · PMID 23724959
  not yet assessed
• A Pathogenic Mechanism in Huntington's Disease Involves Small CAG-Repeated RNAs with Neurotoxic Activity ↗

  PLoS Genetics · 2012 · PMID 22383888
  not yet assessed
• Molecular Modelling Studies on Molecular Pathways Related to Tumorigenesis in the Discovery of New Lead Compounds.

  Nova Science Publishers (Nova Science Publishers, Inc.) · 2012
  not yet assessed
• A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome ↗

  Bioinformatics · 2011 · PMID 21976421
  not yet assessed
• A myriad of miRNA variants in control and Huntington’s disease brain regions detected by massively parallel sequencing ↗

  Nucleic Acids Research · 2010 · PMID 20591823
  not yet assessed
• SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells ↗

  Nucleic Acids Research · 2009 · PMID 20008100
  not yet assessed
• Identification of Copy Number Variants Defining Genomic Differences among Major Human Groups ↗

  PLoS ONE · 2009 · PMID 19789632
  not yet assessed
• Fibroblast-Derived Induced Pluripotent Stem Cells Show No Common Retroviral Vector Insertions ↗

  Stem Cells · 2008 · PMID 19008347
  not yet assessed
• ProSeeK: A web server for MLPA probe design ↗

  BMC Genomics · 2008 · PMID 19040730
  not yet assessed
• Genome assembly comparison identifies structural variants in the human genome ↗

  Nature Genetics · 2006 · PMID 17115057
  not yet assessed