Barbara Montanini

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum.⚑
  2014 L1 61/100 ⚑

1 assessed by us (0 reproduced) · 100 not yet assessed — every PubMed paper on record, linked below.

• PM2.5 exposure induces functional alterations in pregnant rats heart and in human stem cell derived cardiac spheroids ↗

  Archives of Toxicology · 2026 · PMID 41786966
  not yet assessed
• Transcriptomic analysis reveals lipid metabolism and macrophage involvement associated with nintedanib treatment in a rat bleomycin model ↗

  British Journal of Pharmacology · 2026 · PMID 41866841
  not yet assessed
• Supplementary Material of the paper "Opsin repertoire and predicted spectral tuning in three shallow-water podocopid ostracods (Crustacea: Ostracoda)" ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Supplementary Material of the paper "Opsin repertoire and predicted spectral tuning in three shallow-water podocopid ostracods (Crustacea: Ostracoda)" ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Evidence for a Modulatory Effect of a 12‐Week Pomegranate Juice Intervention on the Transcriptional Response in Inflammatory Bowel Disease Patients Reducing Fecal Calprotectin Levels: Findings From a Proof‐of‐Principle Study ↗

  Molecular Nutrition & Food Research · 2025 · PMID 40255128
  not yet assessed
• Biventricular electromechanical dysfunction and molecular remodeling in a rat model of advanced pulmonary arterial hypertension ↗

  Journal of Translational Medicine · 2025 · PMID 40652243
  not yet assessed
• Robust automatic system for spheroid image-processing of kinematic measurement and evaluation ↗

  Measurement · 2025
  not yet assessed
• Small molecules targeting the eubacterial β-sliding clamp discovered by combined in silico and in vitro screening approaches ↗

  Journal of Enzyme Inhibition and Medicinal Chemistry · 2025 · PMID 39749973
  not yet assessed
• Longitudinal transcriptomic analysis of the hyperoxia-exposed preterm rabbit as a model of BPD ↗

  Frontiers in Pediatrics · 2025 · PMID 40352610
  not yet assessed
• Automated Sample Preparation for the Multiplexed Analysis of Single-Cell Histone Post-Translational Modifications (sc-hPTM2) ↗

  Journal of Visualized Experiments · 2025 · PMID 41490176
  not yet assessed
• Time course transcriptome analysis of a bleomycin-induced lung fibrosis mouse model ↗

  2025
  not yet assessed
• Adenovirus small E1A directs activation of Alu transcription at YAP/TEAD- and AP-1-bound enhancers through interactions with the EP400 chromatin remodeler ↗

  Nucleic Acids Research · 2024 · PMID 39011896
  not yet assessed
• Image Processing System Based on Mesh Technology for Cell Kinematic Measurement ↗

  2024
  not yet assessed
• Broad Neutralization Capacity of an Engineered Thermostable Three-Helix Angiotensin-Converting Enzyme 2 Polypeptide Targeting the Receptor-Binding Domain of SARS-CoV-2 ↗

  International Journal of Molecular Sciences · 2024 · PMID 39596383
  not yet assessed
• Assessing the impact of air pollution on human embryonic cardioids using innovative longitudinal monitoring and machine learning ↗

  Vascular Pharmacology · 2024 · PMID 38985639
  not yet assessed
• Transcriptomic analysis reveals lipid metabolism and macrophage involvement associated with nintedanib treatment in a rat bleomycin model ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Robust Automatic System for Spheroid Image-Processing of Kinematic Measurement and Evaluation ↗

  SSRN Electronic Journal · 2024
  not yet assessed
• Deregulated intracellular pathways define novel molecular targets for HBV-specific CD8 T cell reconstitution in chronic hepatitis B ↗

  Journal of Hepatology · 2023 · PMID 36893853
  not yet assessed
• Time-resolved transcriptomic profiling of the developing rabbit’s lungs: impact of premature birth and implications for modelling bronchopulmonary dysplasia ↗

  Respiratory Research · 2023 · PMID 36922832
  not yet assessed
• Time-course transcriptome analysis of a double challenge bleomycin-induced lung fibrosis rat model uncovers ECM homoeostasis-related translationally relevant genes ↗

  BMJ Open Respiratory Research · 2023 · PMID 37730279
  not yet assessed
• TFIIIC as a Potential Epigenetic Modulator of Histone Acetylation in Human Stem Cells ↗

  International Journal of Molecular Sciences · 2023 · PMID 36835038
  not yet assessed
• A dry powder formulation for peripheral lung delivery and absorption of an anti-SARS-CoV-2 ACE2 decoy polypeptide ↗

  European Journal of Pharmaceutical Sciences · 2023 · PMID 37838239
  not yet assessed
• Transcriptomic analysis of the developing rabbit’s lung: implication of premature birth and post-natal oxygen exposure ↗

  2023
  not yet assessed
• Dry powder inhaler of a miniprotein decoy for SARS-CoV-2 infection inhibition ↗

  2023
  not yet assessed
• Additional file 1 of Time-resolved transcriptomic profiling of the developing rabbit’s lungs: impact of premature birth and implications for modelling bronchopulmonary dysplasia ↗

  Figshare · 2023
  not yet assessed
• An RNA Polymerase III General Transcription Factor Engages in Cell Type-Specific Chromatin Looping ↗

  International Journal of Molecular Sciences · 2022 · PMID 35216376
  not yet assessed
• An Optimized Workflow for the Discovery of New Antimicrobial Compounds Targeting Bacterial RNA Polymerase Complex Formation ↗

  Antibiotics · 2022 · PMID 36290107
  not yet assessed
• Impact of prematurity on rabbit lung development: a key factor for mimicking chronic neonatal lung disease ↗

  2021
  not yet assessed
• Effect of Nintedanib in a rat model of bleomycin-induced lung fibrosis: a transcriptome analysis ↗

  2021
  not yet assessed
• Targeting p53 and histone methyltransferases restores exhausted CD8+ T cells in HCV infection ↗

  Nature Communications · 2020 · PMID 32001678
  not yet assessed
• Biostimulants applied to maize seeds modulate the enzymatic activity and metaproteome of the rhizosphere ↗

  Applied Soil Ecology · 2020
  not yet assessed
• Targeting p53 and histone methyltransferases to restore fully exhausted CD8+ T cells in human HCV infection before and after DAA-therapy ↗

  Journal of Hepatology · 2020
  not yet assessed
• Alu RNA Modulates the Expression of Cell Cycle Genes in Human Fibroblasts ↗

  International Journal of Molecular Sciences · 2019 · PMID 31284509
  not yet assessed
• New Antimicrobials Targeting Bacterial RNA Polymerase Holoenzyme Assembly Identified with an in Vivo BRET-Based Discovery Platform ↗

  ACS Chemical Biology · 2019 · PMID 31310497
  not yet assessed
• Identification and first characterization of DinJ-YafQ toxin-antitoxin systems in Lactobacillus species of biotechnological interest ↗

  Scientific Reports · 2019 · PMID 31114007
  not yet assessed
• Expression of DinJ-YafQ System of Lactobacillus casei Group Strains in Response to Food Processing Stresses ↗

  Microorganisms · 2019 · PMID 31614503
  not yet assessed
• Interpreting and integrating big data in non-coding RNA research ↗

  Emerging Topics in Life Sciences · 2019 · PMID 33523206
  not yet assessed
• Correction: Identification of an early transcriptomic signature of insulin resistance and related diseases in lymphomonocytes of healthy subjects ↗

  PLoS ONE · 2019
  not yet assessed
• Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle ↗

  Nature Ecology & Evolution · 2018 · PMID 30420746
  not yet assessed
• Author Correction: A family of archaea-like carboxylesterases preferentially expressed in the symbiotic phase of the mycorrhizal fungus Tuber melanosporum ↗

  Scientific Reports · 2018 · PMID 30158542
  not yet assessed
• Le urolitine del metabotipo ‘A’ potenziano il profilo antinfiammatorio dei macrofagi M2

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2018
  not yet assessed
• Come l’acido ellagico e i metaboliti degli ellagitannini, le urolitine, possono influenzare la risposta infiammatoria: Dati preliminari dallo studio del trascrittoma di macrofagi umani polarizzati

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2018
  not yet assessed
• Urolithin metabotype A remodels the transcriptome of M2 macrophages towards a non-inflammatory profile

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2018
  not yet assessed
• I campi del sé della Gestalt-ecology ↗

  Università degli Studi di Urbino · 2018
  not yet assessed
• Targeting mitochondrial dysfunction can restore antiviral activity of exhausted HBV-specific CD8 T cells in chronic hepatitis B ↗

  Nature Medicine · 2017 · PMID 28165481
  not yet assessed
• A metaproteomic approach dissecting major bacterial functions in the rhizosphere of plants living in serpentine soil ↗

  Analytical and Bioanalytical Chemistry · 2017 · PMID 28083663
  not yet assessed
• Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  BMC Genomics · 2017 · PMID 28923004
  not yet assessed
• Identification of an early transcriptomic signature of insulin resistance and related diseases in lymphomonocytes of healthy subjects ↗

  PLoS ONE · 2017 · PMID 28777829
  not yet assessed
• Screening for Protein-Protein Interaction Inhibitors Using a Bioluminescence Resonance Energy Transfer (BRET)–Based Assay in Yeast ↗

  SLAS DISCOVERY · 2017 · PMID 28346092
  not yet assessed
• A family of archaea-like carboxylesterases preferentially expressed in the symbiotic phase of the mycorrhizal fungus Tuber melanosporum ↗

  Scientific Reports · 2017 · PMID 28794466
  not yet assessed
• Proteasome dysfunction as a reversible defect underlying virus-specific CD8 cell exhaustion in chronic hepatitis B ↗

  Journal of Hepatology · 2017
  not yet assessed
• Photoreceptors in the dark: A functional white collar-like complex and other putative light-sensing components encoded by the genome of the subterranean fungus Tuber melanosporum ↗

  Fungal Biology · 2017 · PMID 28215352
  not yet assessed
• Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse ↗

  eLife · 2017 · PMID 28858608
  not yet assessed
• Metabolic signatures of chronic hepatitis C evolution revealed by transcriptome profiling of virus-specific CD8 cells across different stages of HCV infection ↗

  Journal of Hepatology · 2017
  not yet assessed
• Development of an integrative approach to identify key molecular targets involved in bleomycin-induced pulmonary fibrosis in rats ↗

  2017
  not yet assessed
• Ruolo delle urolitine, metaboliti colonici degli ellagitannini, nella modulazione della polarizzazione macrofagica

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2017
  not yet assessed
• New Insight and Knowledge on anti-inflammatory Effectiveness of dietary phenolics: a work-in-progress report of the NIKE Project

  Archivio istituzionale della ricerca (Alma Mater Studiorum Università di Bologna) · 2017
  not yet assessed
• Additional file 2: Table S2. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: Table S7. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 8: Table S8. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Table S3. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 4: Table S4. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 5: Table S5. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: Table S1. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: Table S6. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor ↗

  Figshare · 2017
  not yet assessed
• Virus-Mediated Metalloproteinase 1 Induction Revealed by Transcriptome Profiling of Bovine Herpesvirus 4-Infected Bovine Endometrial Stromal Cells ↗

  Biology of Reproduction · 2016 · PMID 27281703
  not yet assessed
• Moonlighting transcriptional activation function of a fungal sulfur metabolism enzyme ↗

  Scientific Reports · 2016 · PMID 27121330
  not yet assessed
• Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators ↗

  Computational and Structural Biotechnology Journal · 2016 · PMID 27453771
  not yet assessed
• In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse ↗

  eLife · 2015 · PMID 25848745
  not yet assessed
• Transcriptomic Analysis of Human Polarized Macrophages: More than One Role of Alternative Activation? ↗

  PLoS ONE · 2015 · PMID 25799240
  not yet assessed
• Author response: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse ↗

  2015
  not yet assessed
• Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content ↗

  Genome biology · 2014 · PMID 25091826
  not yet assessed
• A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum⚑

  GigaScience · 2014 · PMID 25392735
  L1 61/100 ⚑
• Integrative gene transfer in the truffle Tuber borchii by Agrobacterium tumefaciens-mediated transformation ↗

  AMB Express · 2014 · PMID 24949275
  not yet assessed
• Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content ↗

  Genome biology · 2014
  not yet assessed
• O103 TRANSCRIPTOME ANALYSIS OF EXHAUSTED VIRUS-SPECIFIC CD8 T CELLS IN CHRONIC HBV INFECTION IDENTIFIES PROFOUND METABOLIC AND FUNCTIONAL CELL DEFECTS ↗

  Journal of Hepatology · 2014
  not yet assessed
• Structure-Function Analysis of a CVNH-LysM Lectin Expressed during Plant Infection by the Rice Blast Fungus Magnaporthe oryzae ↗

  Structure · 2011 · PMID 21565701
  not yet assessed
• Ability of Bifidobacterium breve To Grow on Different Types of Milk: Exploring the Metabolism of Milk through Genome Analysis ↗

  Applied and Environmental Microbiology · 2011 · PMID 21856831
  not yet assessed
• Global Genome Transcription Profiling of Bifidobacterium bifidum PRL2010 under In Vitro Conditions and Identification of Reference Genes for Quantitative Real-Time PCR ↗

  Applied and Environmental Microbiology · 2011 · PMID 22003014
  not yet assessed
• Tapping Genomics to Unravel Ectomycorrhizal Symbiosis ↗

  Methods in molecular biology · 2011 · PMID 21590427
  not yet assessed
• Analysis of Milk through Genome on Different Types of Milk: Exploring the Ability of Bifidobacterium breve To Grow

  2011
  not yet assessed
• Solution structure of the MoCVNH-LysM module from the rice blast fungus Magnaporthe oryzae protein (MGG_03307) ↗

  Worldwide Protein Data Bank · 2011
  not yet assessed
• Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis ↗

  Nature · 2010 · PMID 20348908
  not yet assessed
• Genome-wide analysis of plant metal transporters, with an emphasis on poplar ↗

  Cellular and Molecular Life Sciences · 2010 · PMID 20623158
  not yet assessed
• Genome‐wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum ↗

  New Phytologist · 2010 · PMID 21058951
  not yet assessed
• Eukaryotic snoRNAs: A paradigm for gene expression flexibility ↗

  Genomics · 2009 · PMID 19446021
  not yet assessed
• The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis ↗

  Nature · 2008 · PMID 18322534
  not yet assessed
• Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity ↗

  BMC Genomics · 2007 · PMID 17448255
  not yet assessed
• A secretory pathway-localized cation diffusion facilitator confers plant manganese tolerance ↗

  Proceedings of the National Academy of Sciences · 2007 · PMID 17494768
  not yet assessed
• The expanded family of ammonium transporters in the perennial poplar plant ↗

  New Phytologist · 2007 · PMID 17335504
  not yet assessed
• A secretory pathway-localized cation diffusion facilitator confers plant manganese tolerance

  Research at the University of Copenhagen (University of Copenhagen) · 2007
  not yet assessed
• The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) ↗

  Science · 2006 · PMID 16973872
  not yet assessed
• Functional properties and differential mode of regulation of the nitrate transporter from a plant symbiotic ascomycete ↗

  Biochemical Journal · 2006 · PMID 16201972
  not yet assessed
• Gene expression profiling of the nitrogen starvation stress response in the mycorrhizal ascomycete Tuber borchii ↗

  Fungal Genetics and Biology · 2006 · PMID 16698294
  not yet assessed
• A threonine synthase homolog from a mammalian genome ↗

  Biochemical and Biophysical Research Communications · 2006 · PMID 17034760
  not yet assessed
• The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) - eScholarship

  2006
  not yet assessed
• The anti‐HIV cyanovirin‐N domain is evolutionarily conserved and occurs as a protein module in eukaryotes ↗

  Proteins Structure Function and Bioinformatics · 2005 · PMID 16003744
  not yet assessed
• Transcript Profiling Reveals Novel Marker Genes Involved in Fruiting Body Formation in Tuber borchii ↗

  Eukaryotic Cell · 2005 · PMID 16151254
  not yet assessed
• Transcript profiling reveals novel marker genes involved in fruiting body formation in Tuber borchii

  HAL (Le Centre pour la Communication Scientifique Directe) · 2005
  not yet assessed
• Distinctive properties and expression profiles of glutamine synthetase from a plant symbiotic fungus ↗

  Biochemical Journal · 2003 · PMID 12683951
  not yet assessed
• A high-affinity ammonium transporter from the mycorrhizal ascomycete Tuber borchii ↗

  Fungal Genetics and Biology · 2002 · PMID 12051892
  not yet assessed