Jin‐Wu Nam

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (3)

• A single-cell survey of <i>Drosophila</i> blood.
  2020 L1 94/100
• Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila.
  2020 L1 86/100
• Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.
  2018 L1 91/100

3 assessed by us (3 reproduced) · 100 not yet assessed — every PubMed paper on record, linked below.

• Mitochondrial metabolic remodeling drives innate immune activation in Drosophila hemocytes ↗

  eLife · 2026
  not yet assessed
• Mitochondrial metabolic remodeling drives innate immune activation in Drosophila hemocytes ↗

  eLife · 2026
  not yet assessed
• shRNAI: A deep neural network for the design of highly potent shRNAs ↗

  Molecular Therapy — Nucleic Acids · 2025 · PMID 41216425
  not yet assessed
• O-GlcNAcylation of NONO regulates paraspeckle component assembly and contributes to colon cancer cell proliferation ↗

  Cell Death Discovery · 2025 · PMID 40360465
  not yet assessed
• NSD Family-Mediated H3K36 Methylation in Human Cancer: Mechanisms and Therapeutic Opportunities ↗

  Biomedicines · 2025 · PMID 41301842
  not yet assessed
• Validation of Self-Reported Cancer Diagnoses in the Korean Atomic Bomb Survivor Cohort Study ↗

  SSRN Electronic Journal · 2025
  not yet assessed
• Corrigendum to “The long noncoding RNA LUCAT1 promotes tumorigenesis by controlling ubiquitination and stability of DNA methyltransferase 1 in esophageal squamous cell carcinoma” [Cancer Lett. (2018) 47–57] ↗

  Cancer Letters · 2025 · PMID 39893067
  not yet assessed
• Validation of self-reported cancer diagnoses in the Korean Atomic Bomb Survivor Cohort study ↗

  Cancer Epidemiology · 2025 · PMID 40215583
  not yet assessed
• Improving HER2 Diagnostics with Digital Real‐Time PCR for Ultrafast, Precise Prediction of Anti‐HER2 Therapy Response in Patients with Breast Cancer ↗

  Small Methods · 2025 · PMID 40913387
  not yet assessed
• Optimal design of synthetic circular RNAs ↗

  Experimental & Molecular Medicine · 2024 · PMID 38871815
  not yet assessed
• Comparative interactome analysis of α-arrestin families in human and Drosophila ↗

  eLife · 2024
  not yet assessed
• Cohort study profile: a cohort of Korean atomic bomb survivors and their offspring ↗

  Epidemiology and Health · 2024 · PMID 39563203
  not yet assessed
• shRNAI: a deep neural network for the design of highly potent shRNAs ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Author Response: Comparative interactome analysis of α-arrestin families in human and Drosophila ↗

  2024
  not yet assessed
• Molecular traces of Drosophila hemocytes reveal transcriptomic conservation with vertebrate myeloid cells ↗

  PLoS Genetics · 2023 · PMID 38113249
  not yet assessed
• Toward the functional interpretation of somatic structural variations: bulk- and single-cell approaches ↗

  Briefings in Bioinformatics · 2023 · PMID 37587831
  not yet assessed
• Cohort Study Protocol: A Cohort of Korean Atomic Bomb Survivors and Their Offspring ↗

  Journal of Preventive Medicine and Public Health · 2023 · PMID 36746417
  not yet assessed
• Clustering malignant cell states using universally variable genes ↗

  Briefings in Bioinformatics · 2023 · PMID 38084922
  not yet assessed
• Comparative interactome analysis of α-arrestin families in human and Drosophila ↗

  eLife · 2023 · PMID 38270169
  not yet assessed
• Comparison of Proportional Mortality Between Korean Atomic Bomb Survivors and the General Population During 1992–2019 ↗

  Journal of Korean Medical Science · 2023 · PMID 37012689
  not yet assessed
• Molecular Traces of &lt;i&gt;Drosophila&lt;/i&gt; Hemocyte Evolution ↗

  SSRN Electronic Journal · 2023
  not yet assessed
• Comparative Interactome Analysis of α-arrestin Families in Human and <i>Drosophila</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  eLife · 2023
  not yet assessed
• Author Response: Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Reviewer #2 (Public Review): Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Reviewer #1 (Public Review): Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  eLife · 2023
  not yet assessed
• Author Response: Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Reviewer #3 (Public Review): Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Reviewer #1 (Public Review): Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Reviewer #2 (Public Review): Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  2023
  not yet assessed
• Comparative Interactome Analysis of α-arrestin Families in Human and Drosophila ↗

  eLife · 2023
  not yet assessed
• hnRNPC induces isoform shifts in miR-21-5p leading to cancer development ↗

  Experimental & Molecular Medicine · 2022 · PMID 35729324
  not yet assessed
• Ultrafast prediction of somatic structural variations by filtering out reads matched to pan-genome k-mer sets ↗

  Nature Biomedical Engineering · 2022 · PMID 36536253
  not yet assessed
• Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome <i>k</i>-mer Sets ↗

  Figshare · 2022
  not yet assessed
• Tumor immune microenvironment lncRNAs ↗

  Briefings in Bioinformatics · 2021 · PMID 34891154
  not yet assessed
• The regulatory impact of RNA-binding proteins on microRNA targeting ↗

  Nature Communications · 2021 · PMID 34417449
  not yet assessed
• Preoperative immune landscape predisposes adverse outcomes in hepatocellular carcinoma patients with liver transplantation ↗

  npj Precision Oncology · 2021 · PMID 33772139
  not yet assessed
• An Inflammatory Loop Between Spleen-Derived Myeloid Cells and CD4+ T Cells Leads to Accumulation of Long-Lived Plasma Cells That Exacerbates Lupus Autoimmunity ↗

  Frontiers in Immunology · 2021 · PMID 33643317
  not yet assessed
• A single-cell survey of Drosophila blood

  eLife · 2020 · PMID 32396065
  L1 94/100
• Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila

  Nature Communications · 2020 · PMID 32900993
  L1 86/100
• Mass Cytometry and Single‐Cell RNA‐seq Profiling of the Heterogeneity in Human Peripheral Blood Mononuclear Cells Interacting with Silver Nanoparticles ↗

  Small · 2020 · PMID 32163679
  not yet assessed
• CGD: Comprehensive guide designer for CRISPR-Cas systems ↗

  Computational and Structural Biotechnology Journal · 2020 · PMID 32308928
  not yet assessed
• Single-cell transcriptome maps of myeloid blood cell lineages in <i>Drosophila</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Author response: A single-cell survey of Drosophila blood ↗

  2020
  not yet assessed
• Author Correction: Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse ↗

  Scientific Reports · 2020
  not yet assessed
• Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome <i>k</i> -mer Sets ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Sa1145 NOVEL LNCRNA HERES REGULATES WNT SIGNALING PATHWAYS VIA INTERACTION WITH EZH2 IN ESOPHAGEAL SQUAMOUS CELL CARCINOMA. ↗

  Gastroenterology · 2020
  not yet assessed
• Nanoparticle Interactions: Mass Cytometry and Single‐Cell RNA‐seq Profiling of the Heterogeneity in Human Peripheral Blood Mononuclear Cells Interacting with Silver Nanoparticles (Small 21/2020) ↗

  Small · 2020
  not yet assessed
• HERES, a lncRNA that regulates canonical and noncanonical Wnt signaling pathways via interaction with EZH2 ↗

  Proceedings of the National Academy of Sciences · 2019 · PMID 31732666
  not yet assessed
• Assessment of Inflammation in Pulmonary Artery Hypertension by 68Ga-Mannosylated Human Serum Albumin ↗

  American Journal of Respiratory and Critical Care Medicine · 2019 · PMID 31322420
  not yet assessed
• UPF1/SMG7-dependent microRNA-mediated gene regulation ↗

  Nature Communications · 2019 · PMID 31519907
  not yet assessed
• <i>En bloc</i>and segmental deletions of human<i>XIST</i>reveal X chromosome inactivation-involving RNA elements ↗

  Nucleic Acids Research · 2019 · PMID 30783652
  not yet assessed
• Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse ↗

  Scientific Reports · 2019 · PMID 31723199
  not yet assessed
• A single-cell survey of <i>Drosophila</i> blood ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Abstract 3551: Dysregulation in microprocessor processing of a primary miRNA, mir-21, leads to downregulation of a tumor suppressor, GHR, progressing hepatocellular carcinoma ↗

  Molecular and Cellular Biology / Genetics · 2019
  not yet assessed
• Abstract 3551: Dysregulation in microprocessor processing of a primary miRNA, mir-21, leads to downregulation of a tumor suppressor, GHR, progressing hepatocellular carcinoma ↗

  Cancer Research · 2019
  not yet assessed
• The small peptide world in long noncoding RNAs ↗

  Briefings in Bioinformatics · 2018 · PMID 30010717
  not yet assessed
• Whole genome and transcriptome maps of the entirely black native Korean chicken breed <i>Yeonsan Ogye</i>

  GigaScience · 2018 · PMID 30010758
  L1 91/100
• TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association ↗

  BMC Bioinformatics · 2018 · PMID 29504902
  not yet assessed
• Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye ↗

  International Journal of Molecular Sciences · 2018 · PMID 30103450
  not yet assessed
• HuR stabilizes a polyadenylated form of replication‐dependent histone mRNAs under stress conditions ↗

  The FASEB Journal · 2018 · PMID 30303743
  not yet assessed
• SNPs and INDELs annotation v1 ↗

  2018
  not yet assessed
• Methylation analysis v1 ↗

  2018
  not yet assessed
• RRBS sequencing protocol v1 ↗

  2018
  not yet assessed
• Protein-coding gene annotation v1 ↗

  2018
  not yet assessed
• lncRNA gene annotation v1 ↗

  2018
  not yet assessed
• Hybrid whole genome assembly v1 ↗

  2018
  not yet assessed
• Whole Genome Sequencing v1 ↗

  2018
  not yet assessed
• Supporting protocols for "Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye" v1 ↗

  2018
  not yet assessed
• Additional file 3: of TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association ↗

  Figshare · 2018
  not yet assessed
• The long noncoding RNA LUCAT1 promotes tumorigenesis by controlling ubiquitination and stability of DNA methyltransferase 1 in esophageal squamous cell carcinoma ↗

  Cancer Letters · 2017 · PMID 29247823
  not yet assessed
• DROSHA targets its own transcript to modulate alternative splicing ↗

  RNA · 2017 · PMID 28400409
  not yet assessed
• Post-transcriptional and translational regulation of mRNA-like long non-coding RNAs by microRNAs in early developmental stages of zebrafish embryos ↗

  BMB Reports · 2017 · PMID 28320503
  not yet assessed
• High-confidence coding and noncoding transcriptome maps ↗

  Genome Research · 2017 · PMID 28396519
  not yet assessed
• Whole genome and transcriptome maps of the entirely black native Korean chicken breed <i>Yeonsan Ogye</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• High-confidence Coding and Noncoding Transcriptome Maps ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• HSF2 Co-regulates Protein-coding and Long Non-coding RNA Genes Specific to Black Tissues of the Black Chicken, Yeonsan Ogye ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• The present and future of<i>de novo</i>whole-genome assembly ↗

  Briefings in Bioinformatics · 2016 · PMID 27742661
  not yet assessed
• Measuring intratumor heterogeneity by network entropy using RNA-seq data ↗

  Scientific Reports · 2016 · PMID 27883053
  not yet assessed
• Incredible RNA: Dual Functions of Coding and Noncoding ↗

  Molecules and Cells · 2016 · PMID 27137091
  not yet assessed
• LIN28A enhances the therapeutic potential of cultured neural stem cells in a Parkinson’s disease model ↗

  Brain · 2016 · PMID 27538419
  not yet assessed
• The expression and functional roles of microRNAs in stem cell differentiation ↗

  BMB Reports · 2016 · PMID 26497582
  not yet assessed
• Pseudo-Reference-Based Assembly of Vertebrate Transcriptomes ↗

  Genes · 2016 · PMID 26927182
  not yet assessed
• In vivo high-throughput profiling of CRISPR–Cpf1 activity ↗

  Nature Methods · 2016 · PMID 27992409
  not yet assessed
• Predicting effective microRNA target sites in mammalian mRNAs ↗

  eLife · 2015 · PMID 26267216
  not yet assessed
• Global estimation of the 3′ untranslated region landscape using RNA sequencing ↗

  Methods · 2015 · PMID 25899044
  not yet assessed
• Author response: Predicting effective microRNA target sites in mammalian mRNAs ↗

  2015
  not yet assessed
• Global Analyses of the Effect of Different Cellular Contexts on MicroRNA Targeting ↗

  Molecular Cell · 2014 · PMID 24631284
  not yet assessed
• Degradome sequencing reveals an endogenous microRNA target in <i>C. elegans</i> ↗

  FEBS Letters · 2013 · PMID 23485825
  not yet assessed
• Long noncoding RNAs in <i>C. elegans</i> ↗

  Genome Research · 2012 · PMID 22707570
  not yet assessed
• Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing ↗

  Molecular Cell · 2010 · PMID 20620952
  not yet assessed
• Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing

  DSpace@MIT (Massachusetts Institute of Technology) · 2010
  not yet assessed
• Conserved MicroRNA miR-8/miR-200 and Its Target USH/FOG2 Control Growth by Regulating PI3K ↗

  Cell · 2009 · PMID 20005803
  not yet assessed
• miR-29 miRNAs activate p53 by targeting p85α and CDC42 ↗

  Nature Structural & Molecular Biology · 2008 · PMID 19079265
  not yet assessed
• Supervised Learning Methods for MicroRNA Studies ↗

  2008
  not yet assessed
• Molecular Basis for the Recognition of Primary microRNAs by the Drosha-DGCR8 Complex ↗

  Cell · 2006 · PMID 16751099
  not yet assessed
• Genomics of microRNA ↗

  Trends in Genetics · 2006 · PMID 16446010
  not yet assessed
• miTarget: microRNA target gene prediction using a support vector machine ↗

  BMC Bioinformatics · 2006 · PMID 16978421
  not yet assessed
• Genetic polymorphism of XRCC3 Thr241Met and breast cancer risk: case-control study in Korean women and meta-analysis of 12 studies ↗

  Breast Cancer Research and Treatment · 2006 · PMID 17063279
  not yet assessed
• Research article - The genome of the sea urchin Strongylocentrotus purpuratus

  UCL Discovery (University College London) · 2006
  not yet assessed
• Obesity and genetic polymorphism of ERCC2 and ERCC4 as modifiers of risk of breast cancer ↗

  Experimental & Molecular Medicine · 2005 · PMID 15886521
  not yet assessed
• A Kernel Method for MicroRNA Target Prediction Using Sensible Data and Position-Based Features ↗

  2005
  not yet assessed