Shanika L. Amarasinghe

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Gli1-expressing stromal cells are highly reparative precursors of long-lived chondroprogenitors in the fetal murine limb.⚑
  2025 L1 10/100 ⚑

1 assessed by us (0 reproduced) · 25 not yet assessed — every PubMed paper on record, linked below.

• Patient-derived intestinal organoids as a model for site-specific mucosal bacterial interactions in paediatric inflammatory bowel disease ↗

  Scientific Reports · 2026 · PMID 41922622
  not yet assessed
• Gli1-expressing stromal cells are highly reparative precursors of long-lived chondroprogenitors in the fetal murine limb⚑

  Nature Communications · 2025 · PMID 41253754
  L1 10/100 ⚑
• Advances in long-read single-cell transcriptomics ↗

  Human Genetics · 2024 · PMID 38787419
  not yet assessed
• Stromal Niche Signals That Orchestrate Intestinal Regeneration ↗

  Cellular and Molecular Gastroenterology and Hepatology · 2024 · PMID 38342301
  not yet assessed
• Compensatory growth and recovery of cartilage cytoarchitecture after transient cell death in fetal mouse limbs ↗

  Nature Communications · 2024 · PMID 38580631
  not yet assessed
• Long-lived chondroprogenitors are generated by fetal-limb Gli1+ cells and are replenished upon mosaic cell-cycle arrest in the cartilage ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures ↗

  Nature Methods · 2023 · PMID 37783886
  not yet assessed
• scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor ↗

  NAR Genomics and Bioinformatics · 2023 · PMID 38046273
  not yet assessed
• Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• scPipe: An extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• A specialized tyrosine-based endocytosis signal in MR1 controls antigen presentation to MAIT cells ↗

  The Journal of Cell Biology · 2022 · PMID 36129434
  not yet assessed
• Arginine-rich C9ORF72 ALS proteins stall ribosomes in a manner distinct from a canonical ribosome-associated quality control substrate ↗

  Journal of Biological Chemistry · 2022 · PMID 36481270
  not yet assessed
• Arginine-rich C9ORF72 ALS Proteins Stall Ribosomes in a Manner Distinct From a Canonical Ribosome-Associated Quality Control Substrate ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Benchmarking long-read RNA-sequencing analysis tools using <i>in silico</i> mixtures ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing ↗

  Genome biology · 2021 · PMID 34763716
  not yet assessed
• long-read-tools.org: an interactive catalogue of analysis methods for long-read sequencing data ↗

  GigaScience · 2021 · PMID 33590862
  not yet assessed
• Additional file 1 of Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing ↗

  Figshare · 2021
  not yet assessed
• Additional file 3 of Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing ↗

  Figshare · 2021
  not yet assessed
• Additional file 4 of Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing ↗

  Figshare · 2021
  not yet assessed
• Additional file 5 of Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing ↗

  Figshare · 2021
  not yet assessed
• Opportunities and challenges in long-read sequencing data analysis ↗

  Genome biology · 2020 · PMID 32033565
  not yet assessed
• Comprehensive characterization of single cell full-length isoforms in human and mouse with long-read sequencing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• AtCIPK16 Mediates Salt Stress Through Phytohormones and Transcription Factors ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Transcriptional variation is associated with differences in shoot sodium accumulation in distinct barley varieties ↗

  Environmental and Experimental Botany · 2019
  not yet assessed
• The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance ↗

  Molecular Phylogenetics and Evolution · 2016 · PMID 27044608
  not yet assessed
• Conserved regions of Plasmodium vivax potential vaccine candidate antigens in Sri Lanka: Conscious in silico analysis of prospective conformational epitope regions ↗

  Asian Pacific Journal of Tropical Medicine · 2014 · PMID 25129470
  not yet assessed