Sijia Huang

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.
  2021 L1 84/100

1 assessed by us (1 reproduced) · 57 not yet assessed — every PubMed paper on record, linked below.

• Dissecting the coordinated progression of cell states in spatial transcriptomics with CoPro ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42079111
  not yet assessed
• Structural basis of substrate recognition and allosteric inhibition in human B ⁰ AT2 ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• Single cell and spatial alternative splicing analysis with Nanopore long read sequencing ↗

  Nature Communications · 2025 · PMID 40683866
  not yet assessed
• UTX (KDM6A) promotes differentiation noncatalytically in somatic self-renewing epithelia ↗

  Proceedings of the National Academy of Sciences · 2025 · PMID 40372430
  not yet assessed
• Establishment and evaluation of a circAdpgk-0001 knockdown method using CRISPR–Cas13d RNA-targeting technology ↗

  PeerJ · 2025 · PMID 41048399
  not yet assessed
• Evaluation of biomarkers and immune microenvironment of gestational diabetes mellitus evidence from omics data and machine learning ↗

  Scientific Reports · 2025 · PMID 41073551
  not yet assessed
• Identification and analysis of cuproptosis associated molecular clusters and immunological profiles in atopic dermatitis ↗

  Frontiers in Immunology · 2025 · PMID 40655146
  not yet assessed
• Cataracts as a potential non-motor marker for Parkinson's disease: An observational study based on UK biobank data ↗

  NeuroMarkers. · 2025
  not yet assessed
• Research on Distribution Network Line Fault Judgement Method Based on Feature Selection Algorithm ↗

  2025
  not yet assessed
• Recovery of biological signals lost in single-cell batch integration with CellANOVA ↗

  Nature Biotechnology · 2024 · PMID 39592777
  not yet assessed
• Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis ↗

  Developmental Cell · 2024 · PMID 38198888
  not yet assessed
• Molecular, biological characterization and drug sensitivity of chidamide-resistant MCF7 cells ↗

  Translational Cancer Research · 2024 · PMID 38881946
  not yet assessed
• Strategies for the Application of Big Data in Preventive Medicine in the Field of Public Health ↗

  Academic Journal of Science and Technology · 2024
  not yet assessed
• Integration of spatial and single-cell data across modalities with weakly linked features ↗

  Nature Biotechnology · 2023 · PMID 37679544
  not yet assessed
• Single-cell transcriptomes reveal a molecular link between diabetic kidney and retinal lesions ↗

  Communications Biology · 2023 · PMID 37670124
  not yet assessed
• Mettl3-catalyzed m ⁶ A regulates histone modifier and modification expression in self-renewing somatic tissue ↗

  Science Advances · 2023 · PMID 37656787
  not yet assessed
• Signal recovery in single cell batch integration ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37215021
  not yet assessed
• Integration of spatial and single-cell data across modalities with weak linkage ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 36711792
  not yet assessed
• Single cell and spatial alternative splicing analysis with long read sequencing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Single cell and spatial alternative splicing analysis with long read sequencing ↗

  Research Square · 2023 · PMID 36993612
  not yet assessed
• Expression and Verification of Cuproptosis-Related Genes in Chronic Obstructive Pulmonary Disease Based on Geo Batabase ↗

  SSRN Electronic Journal · 2023
  not yet assessed
• Plasma metabolomics for the assessment of the progression of non-small cell lung cancer ↗

  The International Journal of Biological Markers · 2022 · PMID 36377344
  not yet assessed
• METTL3 maintains epithelial homeostasis through m ⁶ A-dependent regulation of chromatin modifiers ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• H3K36M provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data

  Genome Medicine · 2021 · PMID 34261540
  L1 84/100
• The SUN1-SPDYA interaction plays an essential role in meiosis prophase I ↗

  Nature Communications · 2021 · PMID 34039995
  not yet assessed
• A Roberta-based model for identifying non-substantive factual elements of the case ↗

  2021
  not yet assessed
• DL-PRS: a novel deep learning approach to polygenic risk scores ↗

  Research Square · 2021
  not yet assessed
• FC 005DEPOSITION OF PLATELET-DERIVED MICRO-PARTICLES IN PODOCYTES CONTRIBUTES TO DIABETIC NEPHROPATHY ↗

  Nephrology Dialysis Transplantation · 2021
  not yet assessed
• Additional file 6 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Additional file 2 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Additional file 1 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Multi-omic and survival datasets used for "DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data" ↗

  Figshare · 2021
  not yet assessed
• Additional file 5 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Additional file 8 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Additional file 3 of DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  Figshare · 2021
  not yet assessed
• Metabolomics Personalized Pathway Analysis Tool [R package lilikoi version 2.0.4]

  2021
  not yet assessed
• DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data ↗

  medRxiv · 2019
  not yet assessed
• Multimodal Meta-Analysis of 1,494 Hepatocellular Carcinoma Samples Reveals Significant Impact of Consensus Driver Genes on Phenotypes ↗

  Clinical Cancer Research · 2018 · PMID 30242023
  not yet assessed
• Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data ↗

  GigaScience · 2018 · PMID 30535020
  not yet assessed
• Virtual Reality (VR) Technology and Landscape Architecture ↗

  MATEC Web of Conferences · 2018
  not yet assessed
• Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• lilikoi: Metabolomics Personalized Pathway Analysis Tool ↗

  2018
  not yet assessed
• More Is Better: Recent Progress in Multi-Omics Data Integration Methods ↗

  Frontiers in Genetics · 2017 · PMID 28670325
  not yet assessed
• Using single‐cell multiple omics approaches to resolve tumor heterogeneity ↗

  Clinical and Translational Medicine · 2017 · PMID 29285690
  not yet assessed
• Multi-modal meta-analysis of 1494 hepatocellular carcinoma samples reveals vast impacts of consensus driver genes on phenotypes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Pathway-Based Multi-Omics Data Integration for Breast Cancer Diagnosis and Prognosis.

  ScholarSpace (University of Hawaii at Manoa) · 2017
  not yet assessed
• Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosis ↗

  Genome Medicine · 2016 · PMID 27036109
  not yet assessed
• Time Series miRNA-mRNA integrated analysis reveals critical miRNAs and targets in macrophage polarization ↗

  Scientific Reports · 2016 · PMID 27981970
  not yet assessed
• Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis ↗

  EBioMedicine · 2016 · PMID 27322459
  not yet assessed
• Meta-dimensional data integration identifies critical pathways for susceptibility, tumorigenesis and progression of endometrial cancer ↗

  Oncotarget · 2016 · PMID 27409342
  not yet assessed
• A Nomogram Derived by Combination of Demographic and Biomarker Data Improves the Noninvasive Evaluation of Patients at Risk for Bladder Cancer ↗

  Cancer Epidemiology Biomarkers & Prevention · 2016 · PMID 27383773
  not yet assessed
• Additional file 1: of Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosis ↗

  Figshare · 2016
  not yet assessed
• Using epigenomics data to predict gene expression in lung cancer ↗

  BMC Bioinformatics · 2015 · PMID 25861082
  not yet assessed
• Power analysis and sample size estimation for RNA-Seq differential expression ↗

  RNA · 2014 · PMID 25246651
  not yet assessed
• A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer ↗

  PLoS Computational Biology · 2014 · PMID 25233347
  not yet assessed
• Molecular characterization of the complete genome of a street rabies virus WH11 isolated from donkey in China ↗

  Virus Genes · 2012 · PMID 22836559
  not yet assessed
• [Identification and sequential analysis on rabies virus isolated from a donkey]. ↗

  PubMed · 2012 · PMID 22883269
  not yet assessed