Johannes Soeding

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Transcriptome maps of general eukaryotic RNA degradation factors.
  2019 L1 60/100

1 assessed by us (0 reproduced) · 34 not yet assessed — every PubMed paper on record, linked below.

• Aggregation in gut: on the link between neurodegeneration and bacterial functional amyloids ↗

  npj Biofilms and Microbiomes · 2026 · PMID 42115189
  not yet assessed
• Analysis of multi-way chromatin interactions at sub-nucleosome resolution identifies synergistic nano-scale interactions within super-enhancers ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• Large‐scale analysis of Drosophila core promoter function using synthetic promoters ↗

  Molecular Systems Biology · 2022 · PMID 35156763
  not yet assessed
• Cln5 represents a new type of cysteine-based S-depalmitoylase linked to neurodegeneration

  Kölner Universitäts PublikationsServer (Universität zu Köln) · 2022
  not yet assessed
• Tejaas results on GTEx v8 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• soedinglab/MMseqs2: MMseqs2 Release 13-45111 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• Tejaas results on GTEx v8 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• MMseqs2 profile/profile: fast and ultra-sensitive searches beyond the twilight zone

  Seoul National University Open Repository (Seoul National University) · 2021
  not yet assessed
• Large-scale analysis of <i>Drosophila</i> core promoter function using synthetic promoters ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Deconvolving nuclesome binding energy from experimental errors ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts ↗

  Faculty of 1000 Research Ltd · 2020
  not yet assessed
• Transcriptome maps of general eukaryotic RNA degradation factors

  eLife · 2019 · PMID 31135339
  L1 60/100
• Reconstructing complex lineage trees from scRNA-seq data using MERLoT ↗

  Nucleic Acids Research · 2019 · PMID 31428793
  not yet assessed
• MetaEuk – sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics ↗

  Faculty of 1000 Research Ltd · 2019
  not yet assessed
• Author response: Transcriptome maps of general eukaryotic RNA degradation factors ↗

  2019
  not yet assessed
• Reconstructing complex lineage trees from scRNA-seq data using MERLoT ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a noncanonical CTD-interacting domain fold ↗

  Proteins Structure Function and Bioinformatics · 2015 · PMID 26219431
  not yet assessed
• Structure of a non-canonical CID of Ctk3 ↗

  2015
  not yet assessed
• Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a noncanonical CTD-interacting domain fold

  DORA PSI (Paul Scherrer Institute) · 2015
  not yet assessed
• A structural model of the active ribosome-bound membrane protein insertase YidC ↗

  eLife · 2014 · PMID 25012291
  not yet assessed
• Author response: A structural model of the active ribosome-bound membrane protein insertase YidC ↗

  2014
  not yet assessed
• Transcriptome Surveillance by Selective Termination of Noncoding RNA Synthesis ↗

  Cell · 2013 · PMID 24210918
  not yet assessed
• Localization of the large subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2013
  not yet assessed
• Model of the large subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2013
  not yet assessed
• Localization of the small subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2013
  not yet assessed
• Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2013
  not yet assessed
• Model of the small subunit RNA based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome ↗

  2010
  not yet assessed
• Localization of the large subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2010
  not yet assessed
• Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome ↗

  2010
  not yet assessed
• Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF. ↗

  2010
  not yet assessed
• Localization of the large subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome ↗

  2010
  not yet assessed
• Model of the large subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2010
  not yet assessed
• Localization of the small subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome ↗

  2010
  not yet assessed
• Strong evaporative cooling of a trapped cesium gas ↗

  Optics Express · 1998 · PMID 19381197
  not yet assessed
• &lt;title&gt;Cooling atoms in dark gravitational laser traps&lt;/title&gt; ↗

  Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · 1996
  not yet assessed