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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
71/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Oryza sativa Japonica Group
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1637974268
reported
total reads
21552293
reported
n content pct
0.007
measured
pct q20 bases
94
measured
pct q30 bases
88.8
measured
gc content pct
52.4
measured
mean read length
76
measured
mean base quality
31.7
measured
adapter content pct
66.19
measured
duplication rate pct
28.42
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 71/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
88.8
measured
×1
94%
mean base quality
31.7
measured
×0.6
62%
adapter content pct
66.19
measured
×0.4
0%
duplication rate pct
28.42
measured
×0.4
100%
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0