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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
59/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Monomorium pharaonis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
948192588
reported
total reads
22576014
reported
n content pct
0.001
measured
pct q20 bases
91.6
measured
pct q30 bases
80.4
measured
gc content pct
38.7
measured
mean read length
42
measured
mean base quality
32.7
measured
adapter content pct
0
measured
duplication rate pct
70.89
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 59/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
80.4
measured
×1
52%
mean base quality
32.7
measured
×0.6
78%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
70.89
measured
×0.4
9%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0