← Dataset search
DRR042361
DDBJProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
57/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
8.37
measured
checksum ok
yes
reported
total bases
2675028490
reported
total reads
9105035
reported
n content pct
0
measured
pct q20 bases
86.8
measured
pct q30 bases
73.8
measured
pct reads q30
71.8
measured
sampled bases
64293585
measured
sampled reads
218798
measured
gc content pct
43.8
measured
polyg tail pct
0
measured
read length sd
15.1
measured
quality dropoff
1.4
measured
read length max
301
measured
read length min
54
measured
read length n50
299
measured
max base quality
38
measured
mean read length
293.8
measured
max n pct per pos
0
measured
mean base quality
31.8
measured
pct reads lt 100bp
0.03
measured
read length median
299
measured
adapter content pct
0.07
measured
median read quality
32.8
measured
duplication rate pct
0.2
measured
overrepresented top pct
0
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 57/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
73.8
measured
×1
19%
duplication rate pct
0.2
measured
×0.5
100%
adapter content pct
0.07
measured
×0.4
100%
QC cost
46 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0