DRR042379

DDBJ

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

454 GS FLX Titanium

Platform

LS454

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 7.8 measured

checksum ok yes reported

total bases 351769640 reported

total reads 583213 reported

n content pct 0.008 measured

pct q20 bases 79.5 measured

pct q30 bases 54.2 measured

pct reads q30 36.3 measured

sampled bases 69785149 measured

sampled reads 111288 measured

gc content pct 46.8 measured

polyg tail pct 0 measured

read length sd 161.5 measured

quality dropoff -1 measured

read length max 981 measured

read length min 75 measured

read length n50 692 measured

max base quality 40 measured

mean read length 627.1 measured

max n pct per pos 0.003 measured

mean base quality 29.1 measured

pct reads lt 100bp 1.09 measured

read length median 672 measured

adapter content pct 0 measured

median read quality 29 measured

duplication rate pct 0.96 measured

overrepresented top pct 0 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 54.2 measured ×1 0%

duplication rate pct 0.96 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 2.2 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0