DRR042380

DDBJ

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

454 GS FLX Titanium

Platform

LS454

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.27 measured

checksum ok yes reported

total bases 237339512 reported

total reads 643946 reported

n content pct 0.034 measured

pct q20 bases 88.9 measured

pct q30 bases 69.9 measured

pct reads q30 81.7 measured

sampled bases 72623705 measured

sampled reads 167943 measured

gc content pct 44.7 measured

polyg tail pct 0 measured

read length sd 82.8 measured

quality dropoff -0.4 measured

read length max 751 measured

read length min 75 measured

read length n50 461 measured

max base quality 40 measured

mean read length 432.4 measured

max n pct per pos 0.01 measured

mean base quality 32.8 measured

pct reads lt 100bp 0.63 measured

read length median 452 measured

adapter content pct 0 measured

median read quality 33.1 measured

duplication rate pct 0.09 measured

overrepresented top pct 0 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 69.9 measured ×1 0%

duplication rate pct 0.09 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0