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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
68/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Arabidopsis thaliana
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
35 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
138664251570
reported
total reads
1892935564
reported
mean coverage
1027.1
extrapolated
n content pct
0.007
measured
pct q20 bases
90.6
measured
pct q30 bases
56.2
measured
gc content pct
37.7
measured
mean read length
36
measured
mean base quality
27.7
measured
adapter content pct
0
measured
duplication rate pct
7.85
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
1027.1
extrapolated
×1.2
100%
pct q30 bases
56.2
measured
×1
0%
duplication rate pct
7.85
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0