ERP001960

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 13 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

13 further papers cite this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 973690183870 reported

total reads 4853962622 reported

mean coverage 314.1 extrapolated

n content pct 0.023 measured

pct q20 bases 97.9 measured

pct q30 bases 93.9 measured

gc content pct 39.9 measured

mean read length 101 measured

mean base quality 37 measured

adapter content pct 0 measured

duplication rate pct 28.91 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 314.1 extrapolated ×1.2 100%

pct q30 bases 93.9 measured ×1 100%

duplication rate pct 28.91 measured ×0.5 35%

adapter content pct 0 measured ×0.4 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0