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Provenance — who produced it, who reused it
Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
7 further papers cite this accession but reuse could not be confirmed.
Deep data QC
48/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human gut metagenome
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
595 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1641289089780
reported
total reads
10067996412
reported
n content pct
0
measured
pct q20 bases
83.7
measured
pct q30 bases
70.3
measured
gc content pct
45.6
measured
mean read length
44
measured
mean base quality
32.8
measured
adapter content pct
0
measured
duplication rate pct
3.04
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 48/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
70.3
measured
×1
2%
duplication rate pct
3.04
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0