ERP004605

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

579 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1471594190043 reported

total reads 9134244964 reported

n content pct 0 measured

pct q20 bases 98.1 measured

pct q30 bases 88.8 measured

gc content pct 45.6 measured

mean read length 79 measured

mean base quality 34.7 measured

adapter content pct 0 measured

duplication rate pct 4.89 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.8 measured ×1 94%

duplication rate pct 4.89 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0