ERP005547

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

21 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 32829216684 reported

total reads 174623493 reported

mean coverage 2735.8 extrapolated

n content pct 0.025 measured

pct q20 bases 90.3 measured

pct q30 bases 84.9 measured

gc content pct 24.6 measured

mean read length 94 measured

mean base quality 34.3 measured

adapter content pct 0.15 measured

duplication rate pct 69.85 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 2735.8 extrapolated ×1.2 100%

pct q30 bases 84.9 measured ×1 75%

duplication rate pct 69.85 measured ×0.5 0%

adapter content pct 0.15 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0