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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
96/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Enteritidis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
525689799
reported
total reads
7222417
reported
n content pct
0
measured
pct q20 bases
98.6
measured
pct q30 bases
93.1
measured
gc content pct
51.8
measured
mean read length
72.7
measured
mean base quality
35.7
measured
adapter content pct
0
measured
duplication rate pct
13.25
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 96/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
93.1
measured
×1
100%
duplication rate pct
13.25
measured
×0.5
84%
adapter content pct
0
measured
×0.4
100%
QC cost
12 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0