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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
88/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Triticum aestivum
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
51 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
175749922664
reported
total reads
1879286434
reported
n content pct
0.068
measured
pct q20 bases
92.6
measured
pct q30 bases
84.4
measured
gc content pct
53.7
measured
mean read length
72
measured
mean base quality
34
measured
adapter content pct
0.04
measured
duplication rate pct
17.43
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
84.4
measured
×1
72%
mean base quality
34
measured
×0.6
100%
adapter content pct
0.04
measured
×0.4
100%
duplication rate pct
17.43
measured
×0.4
100%
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0