ERP014247

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

9 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 113171043000 reported

total reads 452684172 reported

n content pct 0.007 measured

pct q20 bases 92.2 measured

pct q30 bases 86.4 measured

gc content pct 45.4 measured

mean read length 125 measured

mean base quality 34.7 measured

adapter content pct 10.52 measured

duplication rate pct 46.82 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.4 measured ×1 82%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 10.52 measured ×0.4 53%

duplication rate pct 46.82 measured ×0.4 63%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0