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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
86/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WES
Organism
Leishmania donovani
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
378 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
350978690350
reported
total reads
4378071748
reported
n content pct
0.005
measured
pct q20 bases
92.5
measured
pct q30 bases
84.8
measured
gc content pct
61.6
measured
mean read length
125
measured
mean base quality
33.8
measured
adapter content pct
0.13
measured
duplication rate pct
11.82
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 86/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
84.8
measured
×1
74%
duplication rate pct
11.82
measured
×0.5
100%
adapter content pct
0.13
measured
×0.4
100%
QC cost
30 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0