Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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ERP120267

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Blue coral (Heliopora coerulea) bulk-RNA-seq on HiSeq 2000 with 990.9 million 50 bp reads at 98.8% Q20 and 97.3% Q30 across 49.5 Gb provides exceptional scale for coral transcriptomics. The 41.8% GC is lower than vertebrates, reflecting cnidarian genomes; ultra-deep coverage enables study of symbiosis, stress responses, and reef ecology.

Data type / assay
bulk-RNA-seq
Organism
Heliopora coerulea
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
17 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 49544282400 reported
total reads 990885648 reported
n content pct 0.001 measured
pct q20 bases 98.8 measured
pct q30 bases 97.3 measured
gc content pct 41.8 measured
mean read length 50 measured
mean base quality 36.9 measured
adapter content pct 0 measured
duplication rate pct 3.61 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
mean base quality 36.9 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 3.61 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 50