ERR019800

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

53/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Shigella sonnei

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 120984485 reported

total reads 1052039 reported

n content pct 0.027 measured

pct q20 bases 90.5 measured

pct q30 bases 73.4 measured

gc content pct 50.5 measured

mean read length 54 measured

mean base quality 29.3 measured

adapter content pct 0 measured

duplication rate pct 11.82 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 53/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.4 measured ×1 17%

duplication rate pct 11.82 measured ×0.5 88%

adapter content pct 0 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0