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ERR036238
ENAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
78/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Mycobacterium tuberculosis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
6.44
measured
checksum ok
yes
reported
total bases
491607150
reported
total reads
3277381
reported
n content pct
0.002
measured
pct q20 bases
92.8
measured
pct q30 bases
84.4
measured
pct reads q30
85.5
measured
sampled bases
71597100
measured
sampled reads
954628
measured
gc content pct
65.3
measured
polyg tail pct
0.15
measured
read length sd
0
measured
quality dropoff
-10.6
measured
read length max
75
measured
read length min
75
measured
read length n50
75
measured
max base quality
40
measured
mean read length
75
measured
max n pct per pos
0.046
measured
mean base quality
34.3
measured
pct reads lt 100bp
100
measured
read length median
75
measured
adapter content pct
0
measured
median read quality
35.9
measured
duplication rate pct
16.89
measured
overrepresented top pct
0
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 78/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
84.4
measured
×1
72%
duplication rate pct
16.89
measured
×0.5
72%
adapter content pct
0
measured
×0.4
100%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0