ERR1019054

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 119665874400 reported

total reads 598329372 reported

mean coverage 38.6 extrapolated

n content pct 0.041 measured

pct q20 bases 86.1 measured

pct q30 bases 76 measured

gc content pct 54.7 measured

mean read length 100 measured

mean base quality 31.1 measured

adapter content pct 0.02 measured

duplication rate pct 5.17 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 38.6 extrapolated ×1.2 100%

pct q30 bases 76 measured ×1 30%

duplication rate pct 5.17 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0