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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
68/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Staphylococcus aureus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
372457506
reported
total reads
1233303
reported
n content pct
0.029
measured
pct q20 bases
95.8
measured
pct q30 bases
89.4
measured
gc content pct
33
measured
mean read length
150
measured
mean base quality
34.8
measured
adapter content pct
14.2
measured
duplication rate pct
21.22
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 68/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
89.4
measured
×1
97%
duplication rate pct
21.22
measured
×0.5
59%
adapter content pct
14.2
measured
×0.4
6%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0