ERR11404319

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Pseudomonas aeruginosa

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.39 measured

checksum ok yes reported

total bases 267678632 reported

total reads 1015880 reported

n content pct 0.01 measured

pct q20 bases 74 measured

pct q30 bases 56.9 measured

pct reads q30 44.1 measured

sampled bases 57538079 measured

sampled reads 218882 measured

gc content pct 65.8 measured

polyg tail pct 0 measured

read length sd 61.1 measured

quality dropoff 1.3 measured

read length max 301 measured

read length min 35 measured

read length n50 301 measured

max base quality 38 measured

mean read length 262.9 measured

max n pct per pos 0.076 measured

mean base quality 27.9 measured

pct reads lt 100bp 2.64 measured

read length median 300 measured

adapter content pct 0 measured

median read quality 29.2 measured

duplication rate pct 3.52 measured

overrepresented top pct 0.08 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 56.9 measured ×1 0%

duplication rate pct 3.52 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0