ERR11404778

ENA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Pseudomonas aeruginosa

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.49 measured

checksum ok yes reported

total bases 302449709 reported

total reads 1436292 reported

n content pct 1.313 measured

pct q20 bases 75.4 measured

pct q30 bases 62 measured

pct reads q30 55.6 measured

sampled bases 59190957 measured

sampled reads 272737 measured

gc content pct 64.1 measured

polyg tail pct 0.06 measured

read length sd 73 measured

quality dropoff 1.2 measured

read length max 301 measured

read length min 35 measured

read length n50 294 measured

max base quality 38 measured

mean read length 217 measured

max n pct per pos 0.059 measured

mean base quality 28.5 measured

pct reads lt 100bp 4.22 measured

read length median 204 measured

adapter content pct 0 measured

median read quality 31.1 measured

duplication rate pct 4.17 measured

overrepresented top pct 0.05 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 62 measured ×1 0%

duplication rate pct 4.17 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0